Evidence map›Paper›PMID 38774870›Full record

ArticleFrontiers in immunology2024

Constructing immune and prognostic features associated with ADCP in hepatocellular carcinoma and pan-cancer based on scRNA-seq and bulk RNA-seq.

Zhengwei Zhang, Yuying Li, Zhen Quan, Yapeng Li, Liying Zhu, Shibo Sun, Xiaoning Chen

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Article in Frontiers in immunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

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0cells of the map it votes in
5citing papers in PubMed
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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Zhengwei Zhang *Department of General Surgery, The Second Affiliated Hospital of Harbin Medical University, Harbin, China.
Yuying Li *Department of Infectious Diseases, The Second Affiliated Hospital of Harbin Medical University, Harbin, China.
Zhen Quan *Department of Critical Care Medicine, The Second Affiliated Hospital of Harbin Medical University, Harbin, China.
Yapeng LiDepartment of General Surgery, The Second Affiliated Hospital of Harbin Medical University, Harbin, China.
Liying ZhuDepartment of Infectious Diseases, The Second Affiliated Hospital of Harbin Medical University, Harbin, China.
Shibo SunDepartment of General Surgery, The Second Affiliated Hospital of Harbin Medical University, Harbin, China.
Xiaoning ChenDepartment of General Surgery, The Second Affiliated Hospital of Harbin Medical University, Harbin, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aim: Despite the significant therapeutic outcomes achieved in systemic treatments for liver hepatocellular carcinoma (LIHC), it is an objective reality that only a low proportion of patients exhibit an improved objective response rate (ORR) to current immunotherapies. Antibody-dependent cellular phagocytosis (ADCP) immunotherapy is considered the new engine for precision immunotherapy. Based on this, we aim to develop an ADCP-based LIHC risk stratification system and screen for relevant targets. Method: Utilizing a combination of single-cell RNA sequencing (scRNA-seq) and bulk RNA-seq data, we screened for ADCP modulating factors in LIHC and identified differentially expressed genes along with their involved functional pathways. A risk scoring model was established by identifying ADCP-related genes with prognostic value through LASSO Cox regression analysis. The risk scoring model was then subjected to evaluations of immune infiltration and immunotherapy relevance, with pan-cancer analysis and Results: Building on the research by Kamber RA et al., we identified GYPA, CLDN18, and IRX5 as potential key target genes regulating ADCP in LIHC. These genes demonstrated significant correlations with immune infiltration cells, such as M1-type macrophages, and the effectiveness of immunotherapy in LIHC, as well as a close association with clinical pathological staging and patient prognosis. Pan-cancer analysis revealed that CLDN18 was prognostically and immunologically relevant across multiple types of cancer. Validation through tissue and cell samples confirmed that GYPA and CLDN18 were upregulated in liver cancer tissues and cells. Furthermore, Conclusion: We have identified an ADCP signature in LIHC comprising three genes. Analysis based on a risk scoring model derived from these three genes, coupled with subsequent experimental validation, confirmed the pivotal role of M1-type macrophages in ADCP within LIHC, establishing CLDN18 as a critical ADCP regulatory target in LIHC.

Indexed as

Carcinoma, HepatocellularLiver NeoplasmsRNA-SeqBiomarkers, TumorClaudinsFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansImmunotherapyMalePhagocytosisPrognosisSingle-Cell Gene Expression AnalysisTumor MicroenvironmentBiomarkers, TumorClaudinsantibody-dependent cellular phagocytosishepatocellular carcinomaimmunitypan-cancerprognosis

Identifiers

PMID38774870
PMCPMC11106372

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.