Evidence map›Paper›PMID 38774130›Full record

ArticleQuantitative plant biology2024

Mechanically induced localisation of SECONDARY WALL INTERACTING bZIP is associated with thigmomorphogenic and secondary cell wall gene expression.

Joshua H Coomey, Kirk J-M MacKinnon, Ian W McCahill, Bahman Khahani, Pubudu P Handakumbura, Gina M Trabucco, Jessica Mazzola, Nicole A Leblanc, Rithany Kheam, Miriam Hernandez-Romero and 7 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Quantitative plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Joshua H CoomeyBiology Department, University of Massachusetts, Amherst, MA, USA.ORCID https://orcid.org/0000-0001-5866-6671
Kirk J-M MacKinnonBiology Department, University of Massachusetts, Amherst, MA, USA.ORCID https://orcid.org/0000-0001-9698-3985
Ian W McCahillBiology Department, University of Massachusetts, Amherst, MA, USA.
Bahman KhahaniBiology Department, University of Massachusetts, Amherst, MA, USA.ORCID https://orcid.org/0000-0003-4499-2825
Pubudu P HandakumburaBiology Department, University of Massachusetts, Amherst, MA, USA.ORCID https://orcid.org/0000-0002-1708-8315
Gina M TrabuccoBiology Department, University of Massachusetts, Amherst, MA, USA.
Jessica MazzolaBiology Department, University of Massachusetts, Amherst, MA, USA.
Nicole A LeblancBiology Department, University of Massachusetts, Amherst, MA, USA.
Rithany KheamBiology Department, University of Massachusetts, Amherst, MA, USA.
Miriam Hernandez-RomeroBiology Department, University of Massachusetts, Amherst, MA, USA.
Kerrie BarryUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID https://orcid.org/0000-0002-8999-6785
Lifeng LiuUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Ji E LeeUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID https://orcid.org/0000-0001-8325-1689
John P VogelUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID https://orcid.org/0000-0003-1786-2689
Ronan C O'MalleyUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
James J ChambersInstitute for Applied Life Science, University of Massachusetts, Amherst, MA, USA.ORCID https://orcid.org/0000-0003-3883-8215
Samuel P HazenBiology Department, University of Massachusetts, Amherst, MA, USA.ORCID https://orcid.org/0000-0001-9131-8994

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant growth requires the integration of internal and external cues, perceived and transduced into a developmental programme of cell division, elongation and wall thickening. Mechanical forces contribute to this regulation, and thigmomorphogenesis typically includes reducing stem height, increasing stem diameter, and a canonical transcriptomic response. We present data on a bZIP transcription factor involved in this process in grasses.

Indexed as

gene expressionsecondary cell wallthigmomorphogenesis

Identifiers

PMID38774130
PMCPMC11106548

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.