Evidence map›Paper›PMID 38773348›Full record

ArticleNature neuroscience2024

LINE-1 retrotransposons contribute to mouse PV interneuron development.

Gabriela O Bodea, Juan M Botto, Maria E Ferreiro, Francisco J Sanchez-Luque, Jose de Los Rios Barreda, Jay Rasmussen, Muhammed A Rahman, Laura R Fenlon, Natasha Jansz, Carolina Gubert and 18 more

Abstract read
In one paragraph

Article in Nature neuroscience, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors.

Gabriela O BodeaQueensland Brain Institute, University of Queensland, Brisbane, Queensland, Australia. gabriela.bodea@gmail.com.ORCID http://orcid.org/0000-0002-9670-5237
Juan M BottoQueensland Brain Institute, University of Queensland, Brisbane, Queensland, Australia.
Maria E FerreiroQueensland Brain Institute, University of Queensland, Brisbane, Queensland, Australia.
Francisco J Sanchez-LuqueInstitute of Parasitology and Biomedicine 'López-Neyra', Spanish National Research Council, Granada, Spain.
Jose de Los Rios BarredaQueensland Brain Institute, University of Queensland, Brisbane, Queensland, Australia.ORCID http://orcid.org/0009-0003-6069-6847
Jay RasmussenQueensland Brain Institute, University of Queensland, Brisbane, Queensland, Australia.
Muhammed A RahmanQueensland Brain Institute, University of Queensland, Brisbane, Queensland, Australia.
Laura R FenlonQueensland Brain Institute, University of Queensland, Brisbane, Queensland, Australia.
Natasha JanszMater Research Institute - University of Queensland, TRI Building, Woolloongabba, Queensland, Australia.
Carolina GubertFlorey Institute of Neuroscience and Mental Health, University of Melbourne, Parkville, Victoria, Australia.ORCID http://orcid.org/0000-0002-8078-1390
Patricia GerdesMater Research Institute - University of Queensland, TRI Building, Woolloongabba, Queensland, Australia.ORCID http://orcid.org/0000-0002-1148-9134
Liviu-Gabriel BodeaClem Jones Centre for Ageing Dementia Research, Queensland Brain Institute, University of Queensland, Brisbane, Queensland, Australia.ORCID http://orcid.org/0000-0002-9604-9524
Prabha AjjikuttiraQueensland Brain Institute, University of Queensland, Brisbane, Queensland, Australia.ORCID http://orcid.org/0000-0002-4546-4728
Darwin J Da Costa GuevaraQueensland Brain Institute, University of Queensland, Brisbane, Queensland, Australia.
Linda CumnerQueensland Brain Institute, University of Queensland, Brisbane, Queensland, Australia.
Charles C BellMater Research Institute - University of Queensland, TRI Building, Woolloongabba, Queensland, Australia.ORCID http://orcid.org/0000-0003-2194-8311
Peter KozulinQueensland Brain Institute, University of Queensland, Brisbane, Queensland, Australia.ORCID http://orcid.org/0000-0002-7872-9884
Victor BillonQueensland Brain Institute, University of Queensland, Brisbane, Queensland, Australia.ORCID http://orcid.org/0000-0002-1609-8220
Santiago MorellMater Research Institute - University of Queensland, TRI Building, Woolloongabba, Queensland, Australia.
Marie-Jeanne H C KempenMRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Western General Hospital, Edinburgh, UK.
Chloe J LoveFlorey Institute of Neuroscience and Mental Health, University of Melbourne, Parkville, Victoria, Australia.ORCID http://orcid.org/0000-0002-2024-4083
Karabi SahaDepartment of Pharmaceutical Sciences, South Dakota State University, Brookings, SD, USA.
Lucy M PalmerFlorey Institute of Neuroscience and Mental Health, University of Melbourne, Parkville, Victoria, Australia.ORCID http://orcid.org/0000-0003-3676-657X
Adam D EwingMater Research Institute - University of Queensland, TRI Building, Woolloongabba, Queensland, Australia.ORCID http://orcid.org/0000-0002-4544-994X
Dhanisha J JhaveriQueensland Brain Institute, University of Queensland, Brisbane, Queensland, Australia.ORCID http://orcid.org/0000-0002-5615-3546
Sandra R RichardsonMater Research Institute - University of Queensland, TRI Building, Woolloongabba, Queensland, Australia.ORCID http://orcid.org/0000-0001-5706-3393
Anthony J HannanFlorey Institute of Neuroscience and Mental Health, University of Melbourne, Parkville, Victoria, Australia.ORCID http://orcid.org/0000-0001-7532-8922
Geoffrey J FaulknerQueensland Brain Institute, University of Queensland, Brisbane, Queensland, Australia. faulknergj@gmail.com.ORCID http://orcid.org/0000-0001-5769-4494

Funding

CSL Behring Centenary FellowshipDepartment of Education and Training | Australian Research Council (ARC) DP200102919Department of Health | National Health and Medical Research Council (NHMRC) GNT1106206Department of Health | National Health and Medical Research Council (NHMRC) GNT1108258Department of Health | National Health and Medical Research Council (NHMRC) GNT1126393Department of Health | National Health and Medical Research Council (NHMRC) GNT1173476Department of Health | National Health and Medical Research Council (NHMRC) GNT1173711Department of Health | National Health and Medical Research Council (NHMRC) GNT1176574Deutsche Forschungsgemeinschaft (German Research Foundation) BO4460/1-1
6 · The paper itself

Abstract

Retrotransposons are mobile DNA sequences duplicated via transcription and reverse transcription of an RNA intermediate. Cis-regulatory elements encoded by retrotransposons can also promote the transcription of adjacent genes. Somatic LINE-1 (L1) retrotransposon insertions have been detected in mammalian neurons. It is, however, unclear whether L1 sequences are mobile in only some neuronal lineages or therein promote neurodevelopmental gene expression. Here we report programmed L1 activation by SOX6, a transcription factor critical for parvalbumin (PV) interneuron development. Mouse PV interneurons permit L1 mobilization in vitro and in vivo, harbor unmethylated L1 promoters and express full-length L1 mRNAs and proteins. Using nanopore long-read sequencing, we identify unmethylated L1s proximal to PV interneuron genes, including a novel L1 promoter-driven Caps2 transcript isoform that enhances neuron morphological complexity in vitro. These data highlight the contribution made by L1 cis-regulatory elements to PV interneuron development and transcriptome diversity, uncovered due to L1 mobility in this milieu.

Indexed as

InterneuronsLong Interspersed Nucleotide ElementsParvalbuminsAnimalsGene Expression Regulation, DevelopmentalMaleMiceMice, Inbred C57BLNeurogenesisRetroelementsParvalbuminsRetroelements

Identifiers

PMID38773348
PMCPMC11239520

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.