Evidence map›Paper›PMID 38773335›Full record

ArticleNature structural & molecular biology2024

Coupling enzymatic activity and gating in an ancient TRPM chanzyme and its molecular evolution.

Yihe Huang, Sushant Kumar, Junuk Lee, Wei Lü, Juan Du

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Temperature and intrinsic CaNature structural & molecular biology · 2026
    Article
  2. CaCommunications biology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. A conserved mechanism couples cytosolic domain movements to pore gating in the TRPM2 channel.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Yihe HuangVan Andel Institute, Grand Rapids, MI, USA.
Sushant KumarVan Andel Institute, Grand Rapids, MI, USA.ORCID http://orcid.org/0000-0002-0317-8520
Junuk LeeVan Andel Institute, Grand Rapids, MI, USA.
Wei LüVan Andel Institute, Grand Rapids, MI, USA. wei.lu@vai.org.ORCID http://orcid.org/0000-0002-3009-1025
Juan DuVan Andel Institute, Grand Rapids, MI, USA. juan.du@vai.org.ORCID http://orcid.org/0000-0003-1467-1203

Funding

Pacific Northwest Center for Cryo-EM - Screening supplementU24GM129547 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI EVANS, JAMES E, GOUAUX, JAMES E · 2018 to 2023
$54.8M
Structural and Functional Studies of the TRPM4 and TRPM5 ChannelsR01HL153219 · NHLBI · VAN ANDEL RESEARCH INSTITUTE · PI Wei Lu · 2020 to 2026
$3.9M
Structural Basis of Nociceptor Channel TRPM3 gating and pharmacologyR01NS129804 · NINDS · VAN ANDEL RESEARCH INSTITUTE · PI Juan Du · 2023 to 2026
$2.8M
Structural and functional studies of the TRPM2 channelR01NS111031 · NINDS · VAN ANDEL RESEARCH INSTITUTE · PI DU, JUAN · 2019 to 2023
$2.7M
Structural and functional studies of CALHM channelsR01NS112363 · NINDS · VAN ANDEL RESEARCH INSTITUTE · PI LU, WEI · 2020 to 2024
$2.3M
NHLBI NIH HHS R01 HL153219NIGMS NIH HHS U24 GM129547NINDS NIH HHS R01 NS111031NINDS NIH HHS R01 NS112363NINDS NIH HHS R01 NS129804
6 · The paper itself

Abstract

Channel enzymes represent a class of ion channels with enzymatic activity directly or indirectly linked to their channel function. We investigated a TRPM2 chanzyme from choanoflagellates that integrates two seemingly incompatible functions into a single peptide: a channel module activated by ADP-ribose with high open probability and an enzyme module (NUDT9-H domain) consuming ADP-ribose at a remarkably slow rate. Using time-resolved cryogenic-electron microscopy, we captured a complete series of structural snapshots of gating and catalytic cycles, revealing the coupling mechanism between channel gating and enzymatic activity. The slow kinetics of the NUDT9-H enzyme module confers a self-regulatory mechanism: ADPR binding triggers NUDT9-H tetramerization, promoting channel opening, while subsequent hydrolysis reduces local ADPR, inducing channel closure. We further demonstrated how the NUDT9-H domain has evolved from a structurally semi-independent ADP-ribose hydrolase module in early species to a fully integrated component of a gating ring essential for channel activation in advanced species.

Indexed as

Adenosine Diphosphate RiboseEvolution, MolecularIon Channel GatingChoanoflagellataCryoelectron MicroscopyHumansKineticsModels, MolecularProtein DomainsPyrophosphatasesTRPM Cation ChannelsAdenosine Diphosphate RibosePyrophosphatasesTRPM Cation Channels

Identifiers

PMID38773335
PMCPMC11479946

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.