Evidence map›Paper›PMID 38773114›Full record

ArticleNature communications2024

Heliorhodopsin-mediated light-modulation of ABC transporter.

Shin-Gyu Cho, Ji-Hyun Kim, Ji-Eun Lee, In-Jung Choi, Myungchul Song, Kimleng Chuon, Jin-Gon Shim, Kun-Wook Kang, Kwang-Hwan Jung

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Molecular properties of a viral heliorhodopsin, V2HeR2.Biophysics and physicobiology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Shin-Gyu Cho *Department of Life Science, Sogang University, Seoul, South Korea.ORCID http://orcid.org/0000-0001-9259-7905
Ji-Hyun Kim *Department of Life Science, Sogang University, Seoul, South Korea.ORCID http://orcid.org/0009-0001-4610-111X
Ji-Eun LeeDepartment of Life Science, Sogang University, Seoul, South Korea.
In-Jung ChoiDepartment of Life Science, Sogang University, Seoul, South Korea.
Myungchul SongDepartment of Life Science, Sogang University, Seoul, South Korea.
Kimleng ChuonDepartment of Life Science, Sogang University, Seoul, South Korea.ORCID http://orcid.org/0000-0003-4593-0167
Jin-Gon ShimDepartment of Life Science, Sogang University, Seoul, South Korea.
Kun-Wook KangDepartment of Life Science, Sogang University, Seoul, South Korea.
Kwang-Hwan JungDepartment of Life Science, Sogang University, Seoul, South Korea. kjung@sogang.ac.kr.ORCID http://orcid.org/0000-0002-0828-6539

Funding

National Research Foundation of Korea (NRF) RS-2023-00208633
6 · The paper itself

Abstract

Heliorhodopsins (HeRs) have been hypothesized to have widespread functions. Recently, the functions for few HeRs have been revealed; however, the hypothetical functions remain largely unknown. Herein, we investigate light-modulation of heterodimeric multidrug resistance ATP-binding cassette transporters (OmrDE) mediated by Omithinimicrobium cerasi HeR. In this study, we classifiy genes flanking the HeR-encoding genes and identify highly conservative residues for protein-protein interactions. Our results reveal that the interaction between OcHeR and OmrDE shows positive cooperatively sequential binding through thermodynamic parameters. Moreover, light-induced OcHeR upregulates OmrDE drug transportation. Hence, the binding may be crucial to drug resistance in O. cerasi as it survives in a drug-containing habitat. Overall, we unveil a function of HeR as regulatory rhodopsin for multidrug resistance. Our findings suggest potential applications in optogenetic technology.

Indexed as

ATP-Binding Cassette TransportersLightBacterial ProteinsOptogeneticsProtein BindingRhodopsins, MicrobialATP-Binding Cassette TransportersBacterial ProteinsRhodopsins, Microbial

Identifiers

PMID38773114
PMCPMC11109279

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.