Evidence map›Paper›PMID 38771745›Full record

ArticlePloS one2024

Simulation and experimental study of a cold atmospheric pressure plasma and comparison of efficiency in boosting recombinant Endoglucanase II production in Pichia pastoris.

Zeinab Kabarkouhi, Saeed Hasanpour Tadi, Hadi Mahmoodi, Seyed Omid Ranaei Siadat, Sareh Arjmand, Babak Shokri

Abstract readComparative Study
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Zeinab KabarkouhiLaser and Plasma Research Institute, Shahid Beheshti University, Tehran, Iran.ORCID 0000-0003-0975-5453
Saeed Hasanpour TadiLaser and Plasma Research Institute, Shahid Beheshti University, Tehran, Iran.ORCID 0000-0002-6263-0388
Hadi MahmoodiLaser and Plasma Research Institute, Shahid Beheshti University, Tehran, Iran.
Seyed Omid Ranaei SiadatProtein Research Center, Shahid Beheshti University, Tehran, Iran.
Sareh ArjmandProtein Research Center, Shahid Beheshti University, Tehran, Iran.
Babak ShokriLaser and Plasma Research Institute, Shahid Beheshti University, Tehran, Iran.ORCID 0000-0002-8242-5111

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recombinant proteins are essential in various industries, and scientists employ genetic engineering and synthetic biology to enhance the host cell's protein production capacity. Stress response pathways have been found effective in augmenting protein secretion. Cold atmospheric pressure plasma (CAP) can induce oxidative stress and enhance protein production. Previous studies have confirmed the applicability of CAP jets on Phytase and green fluorescent protein (GFP) production in Pichia pastoris hosts. This study investigates the effect of CAP treatment on another valuable recombinant protein, Endoglucanase II (EgII), integrated into the Pichia pastoris genome. The results demonstrated that plasma induction via two different ignition modes: sinusoidal alternating current (AC) and pulsed direct current (DC) for 120, 180, and 240 s has boosted protein secretion without affecting cell growth and viability. The AC-driven jet exhibited a higher percentage increase in secretion, up to 45%. Simulation of plasma function using COMSOL software provided a pattern of electron temperature (Te) and density distribution, which determine the plasma cocktail's chemistry and reactive species production. Furthermore, electron density (ne) and temperature were estimated from the recorded optical spectrum. The difference in electron properties may explain the moderately different impressions on expression capability. However, cell engineering to improve secretion often remains a trial-and-error approach, and improvements are, at least partially, specific to the protein produced.

Indexed as

CellulasePlasma GasesRecombinant ProteinsAtmospheric PressureComputer SimulationSaccharomycetalesCellulaseendoglucanase 2Plasma GasesRecombinant Proteins

Identifiers

PMID38771745
PMCPMC11108213

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.