Evidence map›Paper›PMID 38770737›Full record

ArticleThe CRISPR journal2024

Novel off-Targeting Events Identified after Genome Wide Analysis of CRISPR-Cas Edited Pigs.

Bethany K Redel, Junchul Yoon, Emily Reese, Hong An, Kyungjun Uh, Paula R Chen, Randall S Prather, Kiho Lee

Abstract read
In one paragraph

Article in The CRISPR journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Bethany K RedelUSDA-ARS, Plant Genetics Research Unit, Columbia, Missouri, USA.ORCID 0000-0002-6444-9064
Junchul YoonDivision of Animal Sciences, University of Missouri, Columbia, Missouri, USA.
Emily ReeseDivision of Animal Sciences, University of Missouri, Columbia, Missouri, USA.
Hong AnBioinformatics and Analytics Core, University of Missouri, Columbia, Missouri, USA.
Kyungjun UhFuturistic Animal Resource & Research Center (FARRC), Korea Research Institute of Bioscience and Biotechnology (KRIBB), Chungcheongbuk-do, Republic of Korea.
Paula R ChenUSDA-ARS, Plant Genetics Research Unit, Columbia, Missouri, USA.
Randall S PratherDivision of Animal Sciences, University of Missouri, Columbia, Missouri, USA.
Kiho LeeDivision of Animal Sciences, University of Missouri, Columbia, Missouri, USA.

Funding

Resource Core for National Swine Resource and Research Center (NSRRC) Years 21-25U42OD011140 · OD · UNIVERSITY OF MISSOURI-COLUMBIA · PI RANDALL S PRATHER · 2012 to 2026
$26.7M
Enhancing The Value of Pigs for Agriculture and Biomedical Applications By Using Novel Genome Editing StrategiesR01OD035561 · OD · UNIVERSITY OF MISSOURI-COLUMBIA · PI Kiho Lee · 2023 to 2026
$3.4M
Validating pig models for Alzheimer's diseaseR21AG079292 · NIA · UNIVERSITY OF MISSOURI-COLUMBIA · PI ALLEN, TIMOTHY ALEXANDER, JAROME, TIMOTHY JOSEPH · 2022 to 2022
$447k
NIA NIH HHS R21 AG079292NIH HHS R01 OD035561NIH HHS U42 OD011140
6 · The paper itself

Abstract

CRISPR-Cas technology has transformed our ability to introduce targeted modifications, allowing unconventional animal models such as pigs to model human diseases and improve its value for food production. The main concern with using the technology is the possibility of introducing unwanted modifications in the genome. In this study, we illustrate a pipeline to comprehensively identify off-targeting events on a global scale in the genome of three different gene-edited pig models. Whole genome sequencing paired with an off-targeting prediction software tool filtered off-targeting events amongst natural variations present in gene-edited pigs. This pipeline confirmed two known off-targeting events in

Indexed as

CRISPR-Cas SystemsGene EditingGenomeAnimalsAnimals, Genetically ModifiedClustered Regularly Interspaced Short Palindromic RepeatsGene Knockout TechniquesGene TargetingSwineWhole Genome Sequencing

Identifiers

PMID38770737
PMCPMC11302191

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.