Evidence map›Paper›PMID 38768248›Full record

ArticlePLoS neglected tropical diseases2024

Dynamics of emergence and genetic diversity of dengue virus in Reunion Island from 2012 to 2022.

Etienne Frumence, David A Wilkinson, Raphaelle Klitting, Muriel Vincent, Nicolas Mnemosyme, Gilda Grard, Nicolas Traversier, Ghislaine Li-Pat-Yuen, Diana Heaugwane, Laurent Souply and 8 more

Abstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Etienne FrumenceCentre National de Référence Arbovirus Associé, CHU de la Réunion Site Nord, Saint-Denis, Réunion, France.ORCID https://orcid.org/0000-0002-7734-7737
David A WilkinsonUMR ASTRE, CIRAD, INRAE, Université de Montpellier, Plateforme technologique CYROI, Sainte-Clotilde, Réunion, France.
Raphaelle KlittingUnité des Virus Émergents (UVE), Aix-Marseille Univ, IRD 190, INSERM 1207, Marseille, France.
Muriel VincentSanté Publique France, Saint Denis, Réunion, France.
Nicolas MnemosymeLaboratoire de microbiologie, CHU de la Réunion-Site Nord, Saint-Denis, Réunion, France.
Gilda GrardCNR des Arbovirus, Marseille, France.
Nicolas TraversierCentre National de Référence Arbovirus Associé, CHU de la Réunion Site Nord, Saint-Denis, Réunion, France.
Ghislaine Li-Pat-YuenCentre National de Référence Arbovirus Associé, CHU de la Réunion Site Nord, Saint-Denis, Réunion, France.
Diana HeaugwaneLaboratoire de microbiologie, CHU de la Réunion-Site Nord, Saint-Denis, Réunion, France.
Laurent SouplyLaboratoire de microbiologie, CHU de la Réunion-Site Nord, Saint-Denis, Réunion, France.
Claude GiryCentre National de Référence Arbovirus Associé, CHU de la Réunion Site Nord, Saint-Denis, Réunion, France.ORCID https://orcid.org/0000-0002-4286-0063
Marie-Claire PatySanté Publique France, Saint Maurice, France.
Louis ColletCentre Hospitalier de Mayotte, Mayotte, France.
Local Laboratory Network
Patrick GérardinINSERM CIC 1410, CHU de la Réunion, Saint-Pierre, Réunion, France.
Fabian ThouillotSanté Publique France, Saint Denis, Réunion, France.
Xavier De LamballerieUnité des Virus Émergents (UVE), Aix-Marseille Univ, IRD 190, INSERM 1207, Marseille, France.
Marie-Christine Jaffar-BandjeeCentre National de Référence Arbovirus Associé, CHU de la Réunion Site Nord, Saint-Denis, Réunion, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDengue is a major public health concern in Reunion Island, marked by recurrent epidemics, including successive outbreaks of dengue virus serotypes 1 and 2 (DENV1 and DENV2) with over 70,000 cases confirmed since 2017. METHODOLOGY/PRINCIPAL

findingsIn this study, we used Oxford Nanopore NGS technology for sequencing virologically-confirmed samples and clinical isolates collected between 2012 and 2022 to investigate the molecular epidemiology and evolution of DENV in Reunion Island. Here, we generated and analyzed a total of 499 DENV1, 360 DENV2, and 18 DENV3 sequences. By phylogenetic analysis, we show that different genotypes and variants of DENV have circulated in the past decade that likely originated from Seychelles, Mayotte and Southeast Asia and highly affected areas in Asia and Africa. CONCLUSIONS/SIGNIFICANCE: DENV sequences from Reunion Island exhibit a high genetic diversity which suggests regular introductions of new viral lineages from various Indian Ocean islands. The insights from our phylogenetic analysis may inform local health authorities about the endemicity of DENV variants circulating in Reunion Island and may improve dengue management and surveillance. This work emphasizes the importance of strong local coordination and collaboration to inform public health stakeholders in Reunion Island, neighboring areas, and mainland France.

Indexed as

DengueDengue VirusGenetic VariationGenotypePhylogenyDisease OutbreaksHigh-Throughput Nucleotide SequencingHumansMolecular EpidemiologyReunionSerogroup

Identifiers

PMID38768248
PMCPMC11142707

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.