Evidence map›Paper›PMID 38767572›Full record

ArticleThe Journal of cell biology2024

Proteasome gene expression is controlled by coordinated functions of multiple transcription factors.

Jennifer E Gilda, Asrafun Nahar, Dharanibalan Kasiviswanathan, Nadav Tropp, Tamar Gilinski, Tamar Lahav, Dina Alexandrovich, Yael Mandel-Gutfreund, Soyeon Park, Shenhav Shemer

Abstract read
In one paragraph

Article in The Journal of cell biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Jennifer E GildaFaculty of Biology, Technion Institute of Technology, Haifa, Israel.ORCID 0009-0009-8947-7182
Asrafun NaharUniversity of Colorado , Boulder, CO, USA.ORCID 0000-0002-5590-5793
Dharanibalan KasiviswanathanFaculty of Biology, Technion Institute of Technology, Haifa, Israel.ORCID 0009-0005-8531-335X
Nadav TroppFaculty of Biology, Technion Institute of Technology, Haifa, Israel.ORCID 0009-0005-3934-5510
Tamar GilinskiFaculty of Biology, Technion Institute of Technology, Haifa, Israel.ORCID 0009-0006-9731-4840
Tamar LahavFaculty of Biology, Technion Institute of Technology, Haifa, Israel.ORCID 0009-0001-6756-6135
Dina AlexandrovichFaculty of Biology, Technion Institute of Technology, Haifa, Israel.ORCID 0009-0002-9184-1835
Yael Mandel-GutfreundFaculty of Biology, Technion Institute of Technology, Haifa, Israel.ORCID 0000-0002-8946-8237
Soyeon ParkUniversity of Colorado , Boulder, CO, USA.ORCID 0000-0001-7601-8053
Shenhav ShemerFaculty of Biology, Technion Institute of Technology, Haifa, Israel.ORCID 0000-0001-8307-466X

Funding

Mechanisms of Chaperone-Mediated Control in the Assembly of the Proteasome HoloenzymeR01GM127688 · NIGMS · UNIVERSITY OF COLORADO · PI PARK, SOYEON · 2018 to 2022
$1.6M
Mechanisms of Chaperone-Mediated Control in the Assembly of the ProteasomeR35GM153336 · NIGMS · UNIVERSITY OF COLORADO · PI Soyeon Park · 2024 to 2026
$1.2M
Israel Science Foundation 1068/19NIGMS NIH HHS R01 GM127688NIGMS NIH HHS R35 GM153336NIH HHS R01GM127688Russell Berrie Nanotechnology InstituteZuckerman STEM postdoctoral fellowship
6 · The paper itself

Abstract

Proteasome activity is crucial for cellular integrity, but how tissues adjust proteasome content in response to catabolic stimuli is uncertain. Here, we demonstrate that transcriptional coordination by multiple transcription factors is required to increase proteasome content and activate proteolysis in catabolic states. Using denervated mouse muscle as a model system for accelerated proteolysis in vivo, we reveal that a two-phase transcriptional program activates genes encoding proteasome subunits and assembly chaperones to boost an increase in proteasome content. Initially, gene induction is necessary to maintain basal proteasome levels, and in a more delayed phase (7-10 days after denervation), it stimulates proteasome assembly to meet cellular demand for excessive proteolysis. Intriguingly, the transcription factors PAX4 and α-PALNRF-1 control the expression of proteasome among other genes in a combinatorial manner, driving cellular adaptation to muscle denervation. Consequently, PAX4 and α-PALNRF-1 represent new therapeutic targets to inhibit proteolysis in catabolic diseases (e.g., type-2 diabetes, cancer).

Indexed as

Nuclear Respiratory Factor 1Paired Box Transcription FactorsProteasome Endopeptidase ComplexProteolysisAnimalsGene Expression RegulationHomeodomain ProteinsMaleMiceMice, Inbred ICRMuscle, SkeletalHomeodomain ProteinsNrf1 protein, mouseNuclear Respiratory Factor 1Paired Box Transcription FactorsPax4 protein, mouseProteasome Endopeptidase Complex

Identifiers

PMID38767572
PMCPMC11104393

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LicenceCC BY-NC-SA
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.