Evidence map›Paper›PMID 38767059›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2024

Loss of function of FAM177A1, a Golgi complex localized protein, causes a novel neurodevelopmental disorder.

Jennefer N Kohler, Nicole R Legro, Dustin Baldridge, Jimann Shin, Angela Bowman, Berrak Ugur, Madelyn M Jackstadt, Leah P Shriver, Gary J Patti, Bo Zhang and 24 more

Abstract read
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
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  3. Pareto optimality reveals an atlas of cellular archetypes.Proceedings of the National Academy of Sciences of the United States of America · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors.

Jennefer N KohlerStanford Center for Undiagnosed Diseases, Stanford University, Stanford, CA; Department of Pediatrics, Division of Medical Genetics, Stanford University School of Medicine, Stanford, CA. Electronic address: jkohler@stanfordhealthcare.org.
Nicole R LegroDepartment of Obstetrics and Gynecology, MedStar Washington Hospital Center and Georgetown University Hospital, Washington, DC. Electronic address: nicole.legro@gunet.georgetown.edu.
Dustin BaldridgeModel Organism Screening Center, Department of Developmental Biology, Washington University School of Medicine in St. Louis, St. Louis, MO.
Jimann ShinModel Organism Screening Center, Department of Developmental Biology, Washington University School of Medicine in St. Louis, St. Louis, MO.
Angela BowmanModel Organism Screening Center, Department of Developmental Biology, Washington University School of Medicine in St. Louis, St. Louis, MO.
Berrak UgurDepartments of Neuroscience and of Cell Biology, Yale University School of Medicine, New Haven, CT.
Madelyn M JackstadtDepartment of Chemistry, Washington University in St. Louis, St. Louis, MO; Department of Medicine, Washington University in St. Louis, St. Louis, MO; Center for Proteomics, Metabolomics, and Isotope Tracing, Washington University in St. Louis, St. Louis, MO.
Leah P ShriverDepartment of Chemistry, Washington University in St. Louis, St. Louis, MO; Department of Medicine, Washington University in St. Louis, St. Louis, MO; Center for Proteomics, Metabolomics, and Isotope Tracing, Washington University in St. Louis, St. Louis, MO.
Gary J PattiDepartment of Chemistry, Washington University in St. Louis, St. Louis, MO; Department of Medicine, Washington University in St. Louis, St. Louis, MO; Center for Proteomics, Metabolomics, and Isotope Tracing, Washington University in St. Louis, St. Louis, MO.
Bo ZhangModel Organism Screening Center, Department of Developmental Biology, Washington University School of Medicine in St. Louis, St. Louis, MO.
Wenjia FengModel Organism Screening Center, Department of Developmental Biology, Washington University School of Medicine in St. Louis, St. Louis, MO.
Anthony R McAdowModel Organism Screening Center, Department of Developmental Biology, Washington University School of Medicine in St. Louis, St. Louis, MO.
Pagé GoddardDepartment of Genetics, Stanford University School of Medicine, Stanford, CA.
Rachel A UngarDepartment of Genetics, Stanford University School of Medicine, Stanford, CA.
Tanner JensenDepartment of Genetics, Stanford University School of Medicine, Stanford, CA.
Kevin S SmithDepartment of Pathology, Stanford University School of Medicine, Stanford, CA.
Laure FresardInvitae, San Francisco, CA.
Raquel AlvarezStanford Center for Undiagnosed Diseases, Stanford University, Stanford, CA; Division of Cardiovascular Medicine, Stanford University School of Medicine, Stanford, CA.
Devon BonnerStanford Center for Undiagnosed Diseases, Stanford University, Stanford, CA; Department of Pediatrics, Division of Medical Genetics, Stanford University School of Medicine, Stanford, CA.
Chloe M ReuterStanford Center for Undiagnosed Diseases, Stanford University, Stanford, CA; Department of Pediatrics, Division of Medical Genetics, Stanford University School of Medicine, Stanford, CA.
Colleen McCormackStanford Center for Undiagnosed Diseases, Stanford University, Stanford, CA.
Elijah KravetsStanford Center for Undiagnosed Diseases, Stanford University, Stanford, CA.
Shruti MarwahaStanford Center for Undiagnosed Diseases, Stanford University, Stanford, CA.
James M HoltPacBio, 1305 O'Brien Drive Menlo Park, CA.
Undiagnosed Diseases Network
Elizabeth A WortheyCenter for Computational Genomics and Data Science, Department of Genetics, University of Alabama, Birmingham, AL.
Euan A AshleyStanford Center for Undiagnosed Diseases, Stanford University, Stanford, CA; Division of Cardiovascular Medicine, Stanford University School of Medicine, Stanford, CA.
Stephen B MontgomeryDepartment of Genetics, Stanford University School of Medicine, Stanford, CA; Department of Pathology, Stanford University School of Medicine, Stanford, CA.
Paul G FisherStanford Center for Undiagnosed Diseases, Stanford University, Stanford, CA; Department of Pediatrics, Division of Neurology and Neurological Sciences, Stanford University School of Medicine, Stanford, CA.
John PostlethwaitInstitute of Neuroscience, University of Oregon, Eugene, OR.
Pietro De CamilliDepartments of Neuroscience and of Cell Biology, Howard Hughes Medical Institute, Program in Cellular Neuroscience, Neurodegeneration and Repair, Yale University School of Medicine, New Haven, CT.
Lila Solnica-KrezelModel Organism Screening Center, Department of Developmental Biology, Washington University School of Medicine in St. Louis, St. Louis, MO.
Jonathan A BernsteinStanford Center for Undiagnosed Diseases, Stanford University, Stanford, CA; Department of Pediatrics, Division of Medical Genetics, Stanford University School of Medicine, Stanford, CA.
Matthew T WheelerStanford Center for Undiagnosed Diseases, Stanford University, Stanford, CA; Division of Cardiovascular Medicine, Stanford University School of Medicine, Stanford, CA.

Funding

Overall: Eunice Kennedy Shriver Intellectual and Developmental Disabilities Research Center at VanderbiltP50HD103537 · NICHD · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Lea K Davis · 2020 to 2026
$10.3M
What comes next? Engaging stakeholders in governance of participant data and relationships during the sunset of large genomic medicine research initiativesU01HG010218 · NHGRI · STANFORD UNIVERSITY · PI ASHLEY, EUAN A, BERNSTEIN, JONATHAN ADAM · 2018 to 2022
$6.3M
Center for Undiagnosed Diseases at StanfordU01NS134358 · NINDS · STANFORD UNIVERSITY · PI Jonathan Adam Bernstein, HOLLY K TABOR · 2023 to 2026
$3.1M
Zebrafish Resource CoreU54NS108251 · NINDS · WASHINGTON UNIVERSITY · PI SCHEDL, TIM, SOLNICAKREZEL, LILIANNA · 2018 to 2022
$2.3M
UCLA clinical site for the investigation of undiagnosed disordersU01NS134356 · NINDS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MARTINEZ-AGOSTO, JULIAN, NELSON, STANLEY F. · 2023 to 2023
$936k
C BRIGGSAE AND C ELEGANS GENOMIC SEQUENCE COMPARISONF32HG000130 · NHGRI · WASHINGTON UNIVERSITY · PI COUCH, JENNIFER A · 1994 to 1995
–
NHGRI NIH HHS F32 HG000130NHGRI NIH HHS U01 HG010218NICHD NIH HHS P50 HD103537NINDS NIH HHS U01 NS134356NINDS NIH HHS U01 NS134358NINDS NIH HHS U54 NS108251
6 · The paper itself

Abstract

purposeThe function of FAM177A1 and its relationship to human disease is largely unknown. Recent studies have demonstrated FAM177A1 to be a critical immune-associated gene. One previous case study has linked FAM177A1 to a neurodevelopmental disorder in 4 siblings.

methodsWe identified 5 individuals from 3 unrelated families with biallelic variants in FAM177A1. The physiological function of FAM177A1 was studied in a zebrafish model organism and human cell lines with loss-of-function variants similar to the affected cohort.

resultsThese individuals share a characteristic phenotype defined by macrocephaly, global developmental delay, intellectual disability, seizures, behavioral abnormalities, hypotonia, and gait disturbance. We show that FAM177A1 localizes to the Golgi complex in mammalian and zebrafish cells. Intersection of the RNA sequencing and metabolomic data sets from FAM177A1-deficient human fibroblasts and whole zebrafish larvae demonstrated dysregulation of pathways associated with apoptosis, inflammation, and negative regulation of cell proliferation.

conclusionOur data shed light on the emerging function of FAM177A1 and defines FAM177A1-related neurodevelopmental disorder as a new clinical entity.

Indexed as

Golgi ApparatusLoss of Function MutationNeurodevelopmental DisordersZebrafishAnimalsChildChild, PreschoolFemaleHumansIntellectual DisabilityMaleMembrane ProteinsPedigreePhenotypeMembrane ProteinsDevelopmental DelayFAM177A1MacrocephalyNeurodevelopmentZebrafish

Identifiers

PMID38767059
PMCPMC11451386

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.