Evidence map›Paper›PMID 38766364›Full record

ArticleDigital health

An innovative technological infrastructure for managing SARS-CoV-2 data across different cohorts in compliance with General Data Protection Regulation.

Chiara Dellacasa, Maurizio Ortali, Elisa Rossi, Hammam Abu Attieh, Thomas Osmo, Miroslav Puskaric, Eugenia Rinaldi, Fabian Prasser, Caroline Stellmach, Salvatore Cataudella and 3 more

Abstract read
In one paragraph

Article in Digital health. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Federated systems for automated infection surveillance: a perspective.Antimicrobial resistance and infection control · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Chiara DellacasaHPC Department, CINECA Consorzio Interuniversitario, Bologna, Italy.ORCID https://orcid.org/0000-0002-8123-1737
Maurizio OrtaliHPC Department, CINECA Consorzio Interuniversitario, Bologna, Italy.
Elisa RossiHPC Department, CINECA Consorzio Interuniversitario, Bologna, Italy.
Hammam Abu AttiehBerlin Institute of Health (BIH), Charité - Universitätsmedizin Berlin, Berlin, Germany.
Thomas OsmoDépartement Archivage et Services aux Données (DASD), Centre Informatique National de l'Enseignement Supérieur (CINES), Montpellier, France.
Miroslav PuskaricHigh Performance Computing Center Stuttgart (HLRS), University of Stuttgart, Stuttgart, Germany.
Eugenia RinaldiBerlin Institute of Health (BIH), Charité - Universitätsmedizin Berlin, Berlin, Germany.
Fabian PrasserBerlin Institute of Health (BIH), Charité - Universitätsmedizin Berlin, Berlin, Germany.
Caroline StellmachBerlin Institute of Health (BIH), Charité - Universitätsmedizin Berlin, Berlin, Germany.
Salvatore CataudellaHPC Department, CINECA Consorzio Interuniversitario, Bologna, Italy.
Bhaskar AgarwalHPC Department, CINECA Consorzio Interuniversitario, Bologna, Italy.
Juan Mata NaranjoHPC Department, CINECA Consorzio Interuniversitario, Bologna, Italy.
Gabriella ScipioneHPC Department, CINECA Consorzio Interuniversitario, Bologna, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: The ORCHESTRA project, funded by the European Commission, aims to create a pan-European cohort built on existing and new large-scale population cohorts to help rapidly advance the knowledge related to the prevention of the SARS-CoV-2 infection and the management of COVID-19 and its long-term sequelae. The integration and analysis of the very heterogeneous health data pose the challenge of building an innovative technological infrastructure as the foundation of a dedicated framework for data management that should address the regulatory requirements such as the General Data Protection Regulation (GDPR). Methods: The three participating Supercomputing European Centres (CINECA - Italy, CINES - France and HLRS - Germany) designed and deployed a dedicated infrastructure to fulfil the functional requirements for data management to ensure sensitive biomedical data confidentiality/privacy, integrity, and security. Besides the technological issues, many methodological aspects have been considered: Berlin Institute of Health (BIH), Charité provided its expertise both for data protection, information security, and data harmonisation/standardisation. Results: The resulting infrastructure is based on a multi-layer approach that integrates several security measures to ensure data protection. A centralised Data Collection Platform has been established in the Italian National Hub while, for the use cases in which data sharing is not possible due to privacy restrictions, a distributed approach for Federated Analysis has been considered. A Data Portal is available as a centralised point of access for non-sensitive data and results, according to findability, accessibility, interoperability, and reusability (FAIR) data principles. This technological infrastructure has been used to support significative data exchange between population cohorts and to publish important scientific results related to SARS-CoV-2. Conclusions: Considering the increasing demand for data usage in accordance with the requirements of the GDPR regulations, the experience gained in the project and the infrastructure released for the ORCHESTRA project can act as a model to manage future public health threats. Other projects could benefit from the results achieved by ORCHESTRA by building upon the available standardisation of variables, design of the architecture, and process used for GDPR compliance.

Indexed as

clinical researchCOVID-19GDPRhealthcare dataSARS-CoV-2

Identifiers

PMID38766364
PMCPMC11100396

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.