Evidence map›Paper›PMID 38766065›Full record

ArticlebioRxiv : the preprint server for biology2024

Interplay of condensate material properties and chromatin heterogeneity governs nuclear condensate ripening.

Deb Sankar Banerjee, Tafadzwa Chigumira, Rachel M Lackner, Josiah C Kratz, David M Chenoweth, Shiladitya Banerjee, Huaiying Zhang

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Deb Sankar BanerjeeDepartment of Physics, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
Tafadzwa ChigumiraDepartment of Chemical Engineering, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
Rachel M LacknerDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA 19104.
Josiah C KratzDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
David M ChenowethDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA 19104.
Shiladitya BanerjeeDepartment of Physics, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
Huaiying ZhangDepartment of Chemical Engineering, Carnegie Mellon University, Pittsburgh, PA 15213, USA.ORCID 0000-0002-1784-2664

Funding

Biophysical models and mechanisms for cellular adaptation to environmental stressR35GM143042 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI BANERJEE, SHILADITYA · 2021 to 2025
$1.6M
Targeting Nucleic Acid Junctions with Small MoleculesR01GM118510 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI CHENOWETH, DAVID MICHAEL · 2016 to 2020
$1.6M
Interinstitutional Program in Cell and Molecular Biology: A Graduate Training Path to Promote Traditional and Non-Traditional Professional OutcomesT32GM133353 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BRODSKY, JEFFREY L., MURRAY, SANDRA ANN · 2020 to 2024
$1.5M
NIGMS NIH HHS R01 GM118510NIGMS NIH HHS R35 GM143042NIGMS NIH HHS T32 GM133353
6 · The paper itself

Abstract

Nuclear condensates play many important roles in chromatin functions, but how cells regulate their nucleation and growth within the complex nuclear environment is not well understood. Here, we report how condensate properties and chromatin mechanics dictate condensate growth dynamics in the nucleus. We induced condensates with distinct properties using different proteins in human cell nuclei and monitored their growth. We revealed two key physical mechanisms that underlie droplet growth: diffusion-driven or ripening-dominated growth. To explain the experimental observations, we developed a quantitative theory that uncovers the mechanical role of chromatin and condensate material properties in regulating condensate growth in a heterogeneous environment. By fitting our theory to experimental data, we find that condensate surface tension is critical in determining whether condensates undergo elastic or Ostwald ripening. Our model also predicts that chromatin heterogeneity can influence condensate nucleation and growth, which we validated by experimentally perturbing the chromatin organization and controlling condensate nucleation. By combining quantitative experimentation with theoretical modeling, our work elucidates how condensate surface tension and chromatin heterogeneity govern nuclear condensate ripening, implying that cells can control both condensate properties and the chromatin organization to regulate condensate growth in the nucleus.

Indexed as

Biomolecular condensatesChromatinElastic ripeningNuclear bodiesOstwald ripening

Identifiers

PMID38766065
PMCPMC11100695

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.