Evidence map›Paper›PMID 38766047›Full record

ArticlebioRxiv : the preprint server for biology2024

Imaging the extracellular matrix in live tissues and organisms with a glycan-binding fluorophore.

Antonio Fiore, Guoqiang Yu, Jason J Northey, Ronak Patel, Thomas A Ravenscroft, Richard Ikegami, Wiert Kolkman, Pratik Kumar, Jonathan B Grimm, Tanya L Dilan and 7 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Antonio FioreJanelia Research Campus, Howard Hughes Medical Institute (HHMI), Ashburn, VA, USA.ORCID 0000-0002-5159-9848
Guoqiang YuJanelia Research Campus, Howard Hughes Medical Institute (HHMI), Ashburn, VA, USA.
Jason J NortheyCenter for Bioengineering and Tissue Regeneration, Department of Surgery, University of California, San Francisco (UCSF), San Francisco, CA, USA.ORCID 0000-0003-3115-2560
Ronak PatelJanelia Research Campus, Howard Hughes Medical Institute (HHMI), Ashburn, VA, USA.
Thomas A RavenscroftJanelia Research Campus, Howard Hughes Medical Institute (HHMI), Ashburn, VA, USA.
Richard IkegamiJanelia Research Campus, Howard Hughes Medical Institute (HHMI), Ashburn, VA, USA.
Wiert KolkmanJanelia Research Campus, Howard Hughes Medical Institute (HHMI), Ashburn, VA, USA.
Pratik KumarJanelia Research Campus, Howard Hughes Medical Institute (HHMI), Ashburn, VA, USA.
Jonathan B GrimmJanelia Research Campus, Howard Hughes Medical Institute (HHMI), Ashburn, VA, USA.
Tanya L DilanJanelia Research Campus, Howard Hughes Medical Institute (HHMI), Ashburn, VA, USA.
Virginia M S RuettenJanelia Research Campus, Howard Hughes Medical Institute (HHMI), Ashburn, VA, USA.
Misha B AhrensJanelia Research Campus, Howard Hughes Medical Institute (HHMI), Ashburn, VA, USA.
Hari ShroffJanelia Research Campus, Howard Hughes Medical Institute (HHMI), Ashburn, VA, USA.
Luke D LavisJanelia Research Campus, Howard Hughes Medical Institute (HHMI), Ashburn, VA, USA.ORCID 0000-0002-0789-6343
Shaohe WangJanelia Research Campus, Howard Hughes Medical Institute (HHMI), Ashburn, VA, USA.
Valerie M WeaverCenter for Bioengineering and Tissue Regeneration, Department of Surgery, University of California, San Francisco (UCSF), San Francisco, CA, USA.
Kayvon PedramJanelia Research Campus, Howard Hughes Medical Institute (HHMI), Ashburn, VA, USA.ORCID 0000-0001-8365-1826

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Tissue mechanics reprograms the tissue to malignancy and metastasisR35CA242447 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI VALERIE MARIE WEAVER · 2020 to 2026
$6.6M
NCI NIH HHS R35 CA242447NIH HHS P40 OD010440
6 · The paper itself

Abstract

All multicellular systems produce and dynamically regulate extracellular matrices (ECM) that play important roles in both biochemical and mechanical signaling. Though the spatial arrangement of these extracellular assemblies is critical to their biological functions, visualization of ECM structure is challenging, in part because the biomolecules that compose the ECM are difficult to fluorescently label individually and collectively. Here, we present a cell-impermeable small molecule fluorophore, termed Rhobo6, that turns on and red shifts upon reversible binding to glycans. Given that most ECM components are densely glycosylated, the dye enables wash-free visualization of ECM, in systems ranging from

Identifiers

PMID38766047
PMCPMC11100790

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.