Evidence map›Paper›PMID 38765108›Full record

ArticleHeliyon2024

Efficient screening of pharmacological broad-spectrum anti-cancer peptides utilizing advanced bidirectional Encoder representation from Transformers strategy.

Yupeng Niu, Zhenghao Li, Ziao Chen, Wenyuan Huang, Jingxuan Tan, Fa Tian, Tao Yang, Yamin Fan, Jiangshu Wei, Jiong Mu

Abstract read
In one paragraph

Article in Heliyon, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yupeng NiuCollege of Information Engineering, Sichuan Agricultural University, Ya'an 625000, China.
Zhenghao LiCollege of Information Engineering, Sichuan Agricultural University, Ya'an 625000, China.
Ziao ChenCollege of Law, Sichuan Agricultural University, Ya'an 625000, China.
Wenyuan HuangCollege of Information Engineering, Sichuan Agricultural University, Ya'an 625000, China.
Jingxuan TanCollege of Information Engineering, Sichuan Agricultural University, Ya'an 625000, China.
Fa TianCollege of Information Engineering, Sichuan Agricultural University, Ya'an 625000, China.
Tao YangCollege of Information Engineering, Sichuan Agricultural University, Ya'an 625000, China.
Yamin FanCollege of Information Engineering, Sichuan Agricultural University, Ya'an 625000, China.
Jiangshu WeiCollege of Information Engineering, Sichuan Agricultural University, Ya'an 625000, China.
Jiong MuCollege of Information Engineering, Sichuan Agricultural University, Ya'an 625000, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the vanguard of oncological advancement, this investigation delineates the integration of deep learning paradigms to refine the screening process for Anticancer Peptides (ACPs), epitomizing a new frontier in broad-spectrum oncolytic therapeutics renowned for their targeted antitumor efficacy and specificity. Conventional methodologies for ACP identification are marred by prohibitive time and financial exigencies, representing a formidable impediment to the evolution of precision oncology. In response, our research heralds the development of a groundbreaking screening apparatus that marries Natural Language Processing (NLP) with the Pseudo Amino Acid Composition (PseAAC) technique, thereby inaugurating a comprehensive ACP compendium for the extraction of quintessential primary and secondary structural attributes. This innovative methodological approach is augmented by an optimized BERT model, meticulously calibrated for ACP detection, which conspicuously surpasses existing BERT variants and traditional machine learning algorithms in both accuracy and selectivity. Subjected to rigorous validation via five-fold cross-validation and external assessment, our model exhibited exemplary performance, boasting an average Area Under the Curve (AUC) of 0.9726 and an F1 score of 0.9385, with external validation further affirming its prowess (AUC of 0.9848 and F1 of 0.9371). These findings vividly underscore the method's unparalleled efficacy and prospective utility in the precise identification and prognostication of ACPs, significantly ameliorating the financial and temporal burdens traditionally associated with ACP research and development. Ergo, this pioneering screening paradigm promises to catalyze the discovery and clinical application of ACPs, constituting a seminal stride towards the realization of more efficacious and economically viable precision oncology interventions.

Indexed as

Anti-cancer peptidesDeep learningNatural language processingTransformers

Identifiers

PMID38765108
PMCPMC11101728

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.