Evidence map›Paper›PMID 38764678›Full record

ArticleACS omega2024

Benchmarking Unsupervised Clustering Algorithms for Atomic Force Microscopy Data on Polyhydroxyalkanoate Films.

Ashish T S Ireddy, Fares D E Ghorabe, Ekaterina I Shishatskaya, Galina A Ryltseva, Alexey E Dudaev, Dmitry A Kozodaev, Michael Nosonovsky, Ekaterina V Skorb, Pavel S Zun

Abstract read
In one paragraph

Article in ACS omega, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Ashish T S IreddyInfochemistry Scientific Centre, ITMO University, 9 Lomonosova St., 191002 St. Petersburg, Russia.
Fares D E GhorabeInfochemistry Scientific Centre, ITMO University, 9 Lomonosova St., 191002 St. Petersburg, Russia.
Ekaterina I ShishatskayaInfochemistry Scientific Centre, ITMO University, 9 Lomonosova St., 191002 St. Petersburg, Russia.
Galina A RyltsevaSiberian Federal University, 79 Svobodnyi Av., 660041 Krasnoyarsk, Russia.
Alexey E DudaevSiberian Federal University, 79 Svobodnyi Av., 660041 Krasnoyarsk, Russia.
Dmitry A KozodaevNT-MDT BV, 7335 Apeldoorn, The Netherlands.
Michael NosonovskyInfochemistry Scientific Centre, ITMO University, 9 Lomonosova St., 191002 St. Petersburg, Russia.ORCID https://orcid.org/0000-0003-0980-3670
Ekaterina V SkorbInfochemistry Scientific Centre, ITMO University, 9 Lomonosova St., 191002 St. Petersburg, Russia.ORCID https://orcid.org/0000-0003-0888-1693
Pavel S ZunInfochemistry Scientific Centre, ITMO University, 9 Lomonosova St., 191002 St. Petersburg, Russia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Surface of polyhydroxyalkanoate (PHA) films of varying monomer compositions are analyzed using atomic force microscopy (AFM) and unsupervised machine learning (ML) algorithms to investigate and classify films based on global attributes such as the scan size, film thickness, and monomer type. The experiment provides benchmarked results for 12 of the most widely used clustering algorithms via a hybrid investigation approach while highlighting the impact of using the Fourier transform (FT) on high-dimensional vectorized data for classification on various pools of data. Our findings indicate that the use of a one-dimensional (1D) FT of vectorized data produces the most accurate outcome. The experiment also provides insights into case-by-case investigations of algorithm performances and the impact of various data pools. Lastly, we show an early version of our tool aimed at investigating surfaces using ML approaches and discuss the results of our current experiment to configure future improvements.

Identifiers

PMID38764678
PMCPMC11097174

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.