Evidence map›Paper›PMID 38764204›Full record

ArticleThe plant genome2024

Genetic control of root architectural traits under drought stress in spring barley (Hordeum vulgare L.).

Md Nurealam Siddiqui, Melisa Jahiu, Mohammad Kamruzzaman, Miguel Sanchez-Garcia, Annaliese S Mason, Jens Léon, Agim Ballvora

Abstract read
In one paragraph

Article in The plant genome, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

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3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Md Nurealam SiddiquiPlant Breeding Department, Institute of Crop Science and Resource Conservation (INRES), University of Bonn, Bonn, Germany.ORCID https://orcid.org/0000-0003-4604-3471
Melisa JahiuPlant Breeding Department, Institute of Crop Science and Resource Conservation (INRES), University of Bonn, Bonn, Germany.ORCID https://orcid.org/0009-0007-2409-3837
Mohammad KamruzzamanPlant Breeding Department, Institute of Crop Science and Resource Conservation (INRES), University of Bonn, Bonn, Germany.
Miguel Sanchez-GarciaDepartment of Biodiversity and Crop Improvement Program, International Center for Agricultural Research in the Dry Areas (ICARDA), Rabat, Morocco.
Annaliese S MasonPlant Breeding Department, Institute of Crop Science and Resource Conservation (INRES), University of Bonn, Bonn, Germany.
Jens LéonPlant Breeding Department, Institute of Crop Science and Resource Conservation (INRES), University of Bonn, Bonn, Germany.
Agim BallvoraPlant Breeding Department, Institute of Crop Science and Resource Conservation (INRES), University of Bonn, Bonn, Germany.

Funding

Deutsche Forschungsgemeinschaft EXC 2070 - 390732324Deutscher Akademischer Austauschdienst 91690550
6 · The paper itself

Abstract

Root architectural traits play pivotal roles in plant adaptation to drought stress, and hence they are considered promising targets in breeding programs. Here, we phenotyped eight root architecture traits in response to well-watered and drought stress conditions in 200 spring barley (Hordeum vulgare L.) inbred lines over two consecutive field seasons. Root architecture traits were less developed under drought in both seasons when compared with control treatments. Genetic variation in root architectural traits was dissected employing a genome-wide association study (GWAS) coupled with linkage disequilibrium mapping. GWAS uncovered a total of 186 significant single nucleotide polymorphism-trait associations for eight root traits under control, drought, and drought-related indices. Of these, a few loci for root traits were detected on chromosomes 3 and 5, which co-located with QTL identified in previous studies. Interestingly, 13 loci showed simultaneou associations with multiple root traits under drought and drought-related indices. These loci harbored candidate genes, which included a wide range of drought-responsive components such as transcription factors, binding proteins, protein kinases, nutrient and ion transporters, and stress signaling factors. For instance, two candidate genes, HORVU7Hr3G0713160 and HORVU6H r3G0626550, are orthologous to AtACX3 and AtVAMPs, which have reported functions in root length-mediated drought tolerance and as a key protein in abiotic stress tolerance, respectively. Interestingly, one of these loci underlying a high-confidence candidate gene NEW ENHANCER OF ROOT DWARFISM1 (NERD1) showed involvement with root development. An allelic variation of this locus in non-coding region was significantly associated with increased root length under drought. Collectively, these results offer promising multi-trait affecting loci and candidate genes underlying root phenotypic responses to drought stress, which may provide valuable resources for genetic improvement of drought tolerance in barley.

Indexed as

DroughtsGenome-Wide Association StudyHordeumPlant RootsQuantitative Trait LociLinkage DisequilibriumPhenotypePolymorphism, Single NucleotideStress, Physiological

Identifiers

PMID38764204
PMCPMC12806945

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.