Evidence map›Paper›PMID 38763699›Full record

ReviewAdvances in immunology2024

Alternative DNA structures in hematopoiesis and adaptive immunity.

Heather Kligfeld, Isabella Han, Ajay Abraham, Vipul Shukla

Abstract readReview
In one paragraph

Review in Advances in immunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Heather KligfeldDepartment of Cell and Developmental Biology, Northwestern University, Chicago, IL, United States; Ann and Robert H. Lurie Children's Hospital of Chicago, Chicago, IL, United States.
Isabella HanDepartment of Cell and Developmental Biology, Northwestern University, Chicago, IL, United States.
Ajay AbrahamDepartment of Cell and Developmental Biology, Northwestern University, Chicago, IL, United States; Center for Human Immunobiology, Northwestern University, Chicago, IL, United States.
Vipul ShuklaDepartment of Cell and Developmental Biology, Northwestern University, Chicago, IL, United States; Center for Human Immunobiology, Northwestern University, Chicago, IL, United States; Robert H. Lurie Comprehensive Cancer Center, Northwestern University, Chicago, IL, United States. Electronic address: vipul.shukla@northwestern.edu.

Funding

Tumor suppressive functions of TET proteins in B cell malignancies: role of G-quadruplex structuresR00CA248835 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI SHUKLA, VIPUL · 2022 to 2024
$726k
Tumor suppressive functions of TET proteins in B cell malignancies: role of G-quadruplex structuresK99CA248835 · NCI · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI SHUKLA, VIPUL · 2020 to 2021
$289k
NCI NIH HHS K99 CA248835NCI NIH HHS R00 CA248835
6 · The paper itself

Abstract

Besides the canonical B-form, DNA also adopts alternative non-B form conformations which are highly conserved in all domains of life. While extensive research over decades has centered on the genomic functions of B-form DNA, understanding how non-B-form conformations influence functional genomic states remains a fundamental and open question. Recent studies have ascribed alternative DNA conformations such as G-quadruplexes and R-loops as important functional features in eukaryotic genomes. This review delves into the biological importance of alternative DNA structures, with a specific focus on hematopoiesis and adaptive immunity. We discuss the emerging roles of G-quadruplex and R-loop structures, the two most well-studied alternative DNA conformations, in the hematopoietic compartment and present evidence for their functional roles in normal cellular physiology and associated pathologies.

Indexed as

Adaptive ImmunityG-QuadruplexesHematopoiesisAnimalsDNAHumansNucleic Acid ConformationDNAAdaptive ImmunityAlternative DNA structuresB cellsG-quadruplexesHematopoiesisR-loopsT cells

Identifiers

PMID38763699
PMCPMC11956803

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.