Evidence map›Paper›PMID 38762540›Full record

ArticleNature communications2024

Copper(I)-nitrene platform for chemoproteomic profiling of methionine.

Samrat Sahu, Benjamin Emenike, Christian Michel Beusch, Pritha Bagchi, David Ezra Gordon, Monika Raj

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
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  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Samrat Sahu *Department of Chemistry, Emory University, Atlanta, GA, USA.ORCID http://orcid.org/0000-0002-9041-472X
Benjamin Emenike *Department of Chemistry, Emory University, Atlanta, GA, USA.
Christian Michel BeuschDepartment of Pathology and Laboratory Medicine, Emory University, Atlanta, GA, USA.
Pritha BagchiDepartment of Biochemistry, Emory University, Atlanta, GA, USA.ORCID http://orcid.org/0000-0001-7229-9476
David Ezra GordonDepartment of Pathology and Laboratory Medicine, Emory University, Atlanta, GA, USA.
Monika RajDepartment of Chemistry, Emory University, Atlanta, GA, USA. monika.raj@emory.edu.ORCID http://orcid.org/0000-0001-9636-2222

Funding

Molecular Imaging Agents for Monitoring Lysine Demethylases in CellsR35GM133719 · NIGMS · EMORY UNIVERSITY · PI RAJ, MONIKA · 2019 to 2023
$2.1M
Chemistry for next-generation single-molecule fluorosequencing technology 2.0.R01HG012941 · NHGRI · EMORY UNIVERSITY · PI RAJ, MONIKA · 2023 to 2023
$2.1M
American Cancer Society (American Cancer Society, Inc.) RSG-22-025-01-CDPNHGRI NIH HHS R01 HG012941NIGMS NIH HHS R35 GM133719
6 · The paper itself

Abstract

Methionine plays a critical role in various biological and cell regulatory processes, making its chemoproteomic profiling indispensable for exploring its functions and potential in protein therapeutics. Building on the principle of rapid oxidation of methionine, we report Copper(I)-Nitrene Platform for robust, and selective labeling of methionine to generate stable sulfonyl sulfimide conjugates under physiological conditions. We demonstrate the versatility of this platform to label methionine in bioactive peptides, intact proteins (6.5-79.5 kDa), and proteins in complex cell lysate mixtures with varying payloads. We discover ligandable proteins and sites harboring hyperreactive methionine within the human proteome. Furthermore, this has been utilized to profile oxidation-sensitive methionine residues, which might increase our understanding of the protective role of methionine in diseases associated with elevated levels of reactive oxygen species. The Copper(I)-Nitrene Platform allows labeling methionine residues in live cancer cells, observing minimal cytotoxic effects and achieving dose-dependent labeling. Confocal imaging further reveals the spatial distribution of modified proteins within the cell membrane, cytoplasm, and nucleus, underscoring the platform's potential in profiling the cellular interactome.

Indexed as

CopperMethionineProteomicsCell Line, TumorHumansIminesOxidation-ReductionPeptidesProteomeCopperIminesMethioninePeptidesphenylnitreneProteome

Identifiers

PMID38762540
PMCPMC11102537

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.