Evidence map›Paper›PMID 38760381›Full record

ArticleNature communications2024

Genomic insights unveil the plasmid transfer mechanism and epidemiology of hypervirulent Klebsiella pneumoniae in Vietnam.

Quynh Nguyen, Yen Thi Phuong Nguyen, Tuyen Thanh Ha, Dung Thi Ngoc Tran, Phat Vinh Voong, Vinh Chau, Phuong Luong Nha Nguyen, Ngan Thi Quynh Le, Lan Phu Huong Nguyen, To Thi Nguyen Nguyen and 8 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Materials today. Bio · 2026
    Article
  5. Article
  6. Article
  7. Genomic characterization ofFrontiers in microbiology · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Anti-plasmid defense in hypervirulentEmerging microbes & infections · 2025
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Mobile genetic elements in shapingFrontiers in microbiology · 2025
    Review
  19. Article
  20. Molecular epidemiology and genetic dynamics of carbapenem-resistant hypervirulentFrontiers in cellular and infection microbiology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Quynh Nguyen *Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Yen Thi Phuong Nguyen *Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Tuyen Thanh HaOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Dung Thi Ngoc TranOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Phat Vinh VoongOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Vinh ChauOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.ORCID http://orcid.org/0000-0001-6634-7267
Phuong Luong Nha NguyenHospital for Tropical Diseases, Ho Chi Minh City, Vietnam.
Ngan Thi Quynh LeHospital for Tropical Diseases, Ho Chi Minh City, Vietnam.
Lan Phu Huong NguyenHospital for Tropical Diseases, Ho Chi Minh City, Vietnam.
To Thi Nguyen NguyenOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Tan Van TrinhOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Juan J Carrique-MasOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Stephen BakerCambridge Institute of Therapeutic Immunology & Infectious Disease (CITIID) Department of Medicine, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0003-1308-5755
Guy ThwaitesOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.ORCID http://orcid.org/0000-0002-2858-2087
Maia A RabaaOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Marc ChoisyOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Hao The ChungOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.ORCID http://orcid.org/0000-0002-4028-4074
Duy Thanh PhamOxford University Clinical Research Unit, Ho Chi Minh City, Vietnam. duypt@oucru.org.ORCID http://orcid.org/0000-0001-7029-9210

Funding

Oxford University | John Fell Fund, University of Oxford (John Fell OUP Research Fund) 0010734Wellcome TrustWellcome Trust (Wellcome) 222983/Z/21/Z
6 · The paper itself

Abstract

Hypervirulent Klebsiella pneumoniae (hvKp) is a significant cause of severe invasive infections in Vietnam, yet data on its epidemiology, population structure and dynamics are scarce. We screened hvKp isolates from patients with bloodstream infections (BSIs) at a tertiary infectious diseases hospital in Vietnam and healthy individuals, followed by whole genome sequencing and plasmid analysis. Among 700 BSI-causing Kp strains, 100 (14.3%) were hvKp. Thirteen hvKp isolates were identified from 350 rectal swabs of healthy adults; none from 500 rectal swabs of healthy children. The hvKp isolates were genetically diverse, encompassing 17 sequence types (STs), predominantly ST23, ST86 and ST65. Among the 113 hvKp isolates, 14 (12.6%) carried at least one antimicrobial resistance (AMR) gene, largely mediated by IncFII, IncR, and IncA/C plasmids. Notably, the acquisition of AMR conjugative plasmids facilitated horizontal transfer of the non-conjugative virulence plasmid between K. pneumoniae strains. Phylogenetic analysis demonstrated hvKp isolates from BSIs and human carriage clustered together, suggesting a significant role of intestinal carriage in hvKp transmission. Enhanced surveillance is crucial to understand the factors driving intestinal carriage and hvKp transmission dynamics for informing preventive measures. Furthermore, we advocate the clinical use of our molecular assay for diagnosing hvKp infections to guide effective management.

Indexed as

Klebsiella InfectionsKlebsiella pneumoniaePhylogenyPlasmidsWhole Genome SequencingAdultAnti-Bacterial AgentsChildDrug Resistance, BacterialFemaleGene Transfer, HorizontalGenome, BacterialGenomicsHumansMaleMiddle AgedAnti-Bacterial Agents

Identifiers

PMID38760381
PMCPMC11101633

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.