Evidence map›Paper›PMID 38760342›Full record

ArticleNature communications2024

The matrisome landscape controlling in vivo germ cell fates.

Aqilah Amran, Lara Pigatto, Johanna Farley, Rasoul Godini, Roger Pocock, Sandeep Gopal

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Aqilah Amran *Department of Experimental Medical Science, Lund University, Lund, Sweden.
Lara Pigatto *Department of Experimental Medical Science, Lund University, Lund, Sweden.
Johanna FarleyDepartment of Experimental Medical Science, Lund University, Lund, Sweden.ORCID http://orcid.org/0009-0006-8590-7112
Rasoul GodiniDevelopment and Stem Cells Program, Monash Biomedicine Discovery Institute. Department of Anatomy and Developmental Biology, Monash University, Melbourne, VIC, Australia.
Roger PocockDevelopment and Stem Cells Program, Monash Biomedicine Discovery Institute. Department of Anatomy and Developmental Biology, Monash University, Melbourne, VIC, Australia. roger.pocock@monash.edu.ORCID http://orcid.org/0000-0002-5515-3608
Sandeep GopalDepartment of Experimental Medical Science, Lund University, Lund, Sweden. sandeep.gopal@med.lu.se.ORCID http://orcid.org/0000-0002-6706-6747

Funding

Cancerfonden (Swedish Cancer Society) 22 2125 PjCrafoordska Stiftelsen (Crafoord Foundation) 20200545Department of Education and Training | Australian Research Council (ARC) DE190100174Department of Education and Training | Australian Research Council (ARC) DP200103293Department of Health | National Health and Medical Research Council (NHMRC) 2018825Department of Health | National Health and Medical Research Council (NHMRC) GNT1105374Department of Health | National Health and Medical Research Council (NHMRC) GNT1137645Department of Health | National Health and Medical Research Council (NHMRC) GNT1161439Franke och Margareta Bergqvists Stiftelse för Främjande av Cancerforskning N/AKungliga Fysiografiska Sällskapet i Lund (Royal Physiographic Society in Lund) N/AVetenskapsrådet (Swedish Research Council) 2019-02020
6 · The paper itself

Abstract

The developmental fate of cells is regulated by intrinsic factors and the extracellular environment. The extracellular matrix (matrisome) delivers chemical and mechanical cues that can modify cellular development. However, comprehensive understanding of how matrisome factors control cells in vivo is lacking. Here we show that specific matrisome factors act individually and collectively to control germ cell development. Surveying development of undifferentiated germline stem cells through to mature oocytes in the Caenorhabditis elegans germ line enabled holistic functional analysis of 443 conserved matrisome-coding genes. Using high-content imaging, 3D reconstruction, and cell behavior analysis, we identify 321 matrisome genes that impact germ cell development, the majority of which (>80%) are undescribed. Our analysis identifies key matrisome networks acting autonomously and non-autonomously to coordinate germ cell behavior. Further, our results demonstrate that germ cell development requires continual remodeling of the matrisome landscape. Together, this study provides a comprehensive platform for deciphering how extracellular signaling controls cellular development and anticipate this will establish new opportunities for manipulating cell fates.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsCell DifferentiationExtracellular MatrixGerm CellsAnimalsCell LineageGene Expression Regulation, DevelopmentalOocytesSignal TransductionCaenorhabditis elegans Proteins

Identifiers

PMID38760342
PMCPMC11101451

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.