Evidence map›Paper›PMID 38758962›Full record

ArticlePLoS computational biology2024

Real-time forecasting of COVID-19-related hospital strain in France using a non-Markovian mechanistic model.

Alexander Massey, Corentin Boennec, Claudia Ximena Restrepo-Ortiz, Christophe Blanchet, Samuel Alizon, Mircea T Sofonea

Abstract read
In one paragraph

Article in PLoS computational biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Alexander MasseyInfectious Diseases and Vectors: Ecology, Genetics, Evolution and Control (MIVEGEC), Université de Montpellier, National Centre for Scientific Research (CNRS), French National Research Institute for Sustainable Development (IRD), Montpellier, France.ORCID 0000-0001-8356-188X
Corentin BoennecLaboratoire Plasma et Conversion d'Energie (LAPLACE), National Centre for Scientific Research (CNRS), Institut National Polytechnique de Toulouse (Toulouse INP), Université Toulouse 3-Paul Sabatier, Toulouse, France.
Claudia Ximena Restrepo-OrtizMARine Biodiversity, Exploitation & Conservation (MARBEC), Université de Montpellier, National Centre for Scientific Research (CNRS), French National Institute for Ocean Science and Technology (Ifremer), French National Research Institute for Sustainable Development (IRD), Montpellier, France.
Christophe BlanchetInstitut Français de Bioinformatique, IFB-core UAR 3601, National Centre for Scientific Research (CNRS), Évry, France.
Samuel AlizonInfectious Diseases and Vectors: Ecology, Genetics, Evolution and Control (MIVEGEC), Université de Montpellier, National Centre for Scientific Research (CNRS), French National Research Institute for Sustainable Development (IRD), Montpellier, France.
Mircea T SofoneaInfectious Diseases and Vectors: Ecology, Genetics, Evolution and Control (MIVEGEC), Université de Montpellier, National Centre for Scientific Research (CNRS), French National Research Institute for Sustainable Development (IRD), Montpellier, France.ORCID 0000-0002-4499-0435

Funding

Centre National de la Recherche Scientifique MODCOVD19/INSMI PASSES
6 · The paper itself

Abstract

Projects such as the European Covid-19 Forecast Hub publish forecasts on the national level for new deaths, new cases, and hospital admissions, but not direct measurements of hospital strain like critical care bed occupancy at the sub-national level, which is of particular interest to health professionals for planning purposes. We present a sub-national French framework for forecasting hospital strain based on a non-Markovian compartmental model, its associated online visualisation tool and a retrospective evaluation of the real-time forecasts it provided from January to December 2021 by comparing to three baselines derived from standard statistical forecasting methods (a naive model, auto-regression, and an ensemble of exponential smoothing and ARIMA). In terms of median absolute error for forecasting critical care unit occupancy at the two-week horizon, our model only outperformed the naive baseline for 4 out of 14 geographical units and underperformed compared to the ensemble baseline for 5 of them at the 90% confidence level (n = 38). However, for the same level at the 4 week horizon, our model was never statistically outperformed for any unit despite outperforming the baselines 10 times spanning 7 out of 14 geographical units. This implies modest forecasting utility for longer horizons which may justify the application of non-Markovian compartmental models in the context of hospital-strain surveillance for future pandemics.

Indexed as

COVID-19ForecastingSARS-CoV-2Bed OccupancyComputational BiologyFranceHospitalizationHospitalsHumansModels, StatisticalPandemicsRetrospective Studies

Identifiers

PMID38758962
PMCPMC11139328

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.