Evidence map›Paper›PMID 38758505›Full record

ArticleMolecular biology reports2024

Knockdown of SCN5A alters metabolic-associated genes and aggravates hypertrophy in the cardiomyoblast.

Ubaid Tariq, Soumalya Sarkar, Navya Malladi, Roshan Kumar, Paramesha Bugga, Praloy Chakraborty, Sanjay K Banerjee

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Article in Molecular biology reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Ubaid Tariq *Non-communicable Disease Group, Translational Health Science and Technology Institute (THSTI), Faridabad, Haryana, 121001, India.ORCID http://orcid.org/0000-0001-5165-1143
Soumalya Sarkar *Non-communicable Disease Group, Translational Health Science and Technology Institute (THSTI), Faridabad, Haryana, 121001, India.ORCID http://orcid.org/0000-0001-6480-687X
Navya MalladiDepartment of Biotechnology, National Institute of Pharmaceutical Education and Research (NIPER), Guwahati, Assam, 781101, India.ORCID http://orcid.org/0000-0002-7230-122X
Roshan KumarNon-communicable Disease Group, Translational Health Science and Technology Institute (THSTI), Faridabad, Haryana, 121001, India.ORCID http://orcid.org/0000-0002-8797-8620
Paramesha BuggaNon-communicable Disease Group, Translational Health Science and Technology Institute (THSTI), Faridabad, Haryana, 121001, India.ORCID http://orcid.org/0000-0001-6815-4442
Praloy ChakrabortyDepartment of Cardiac Electrophysiology, Adult Cardiology, Toronto General Hospital, Toronto, ON, Canada.ORCID http://orcid.org/0000-0002-5054-9136
Sanjay K BanerjeeNon-communicable Disease Group, Translational Health Science and Technology Institute (THSTI), Faridabad, Haryana, 121001, India. sanjay@niperguwahati.in.ORCID http://orcid.org/0000-0002-0008-0480

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SCN5A mutations have been reported to cause various cardiomyopathies in humans. Most of the SCN5A mutations causes loss of function and thereby, alters the overall cellular function. Therefore, to understand the loss of SCN5A function in cardiomyocytes, we have knocked down the SCN5A gene (SCN5A-KD) in H9c2 cells and explored the cell phenotype and molecular behaviors in the presence and absence of isoproterenol (ISO), an adrenergic receptor agonist that induces cardiac hypertrophy. Expression of several genes related to hypertrophy, inflammation, fibrosis, and energy metabolism pathways were evaluated. It was found that the mRNA expression of hypertrophy-related gene, brain (B-type) natriuretic peptide (BNP) was significantly increased in SCN5A-KD cells as compared to 'control' H9c2 cells. There was a further increase in the mRNA expressions of BNP and βMHC in SCN5A-KD cells after ISO treatment compared to their respective controls. Pro-inflammatory cytokine, tumor necrosis factor-alpha expression was significantly increased in 'SCN5A-KD' H9c2 cells. Further, metabolism-related genes like glucose transporter type 4, cluster of differentiation 36, peroxisome proliferator-activated receptor alpha, and peroxisome proliferator-activated receptor-gamma were significantly elevated in the SCN5A-KD cells as compared to the control cells. Upregulation of these metabolic genes is associated with increased ATP production. The study revealed that SCN5A knock-down causes alteration of gene expression related to cardiac hypertrophy, inflammation, and energy metabolism pathways, which may promote cardiac remodelling and cardiomyopathy.

Indexed as

CardiomegalyIsoproterenolNAV1.5 Voltage-Gated Sodium ChannelAnimalsCell LineEnergy MetabolismGene Expression RegulationGene Knockdown TechniquesHumansMyoblasts, CardiacMyocytes, CardiacNatriuretic Peptide, BrainRatsIsoproterenolNatriuretic Peptide, BrainNAV1.5 Voltage-Gated Sodium ChannelSCN5A protein, humanFibrosisH9c2HypertrophyInflammationLentiviral vectorMetabolismSCN5A knockdown

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.