Evidence map›Paper›PMID 38758287›Full record

ArticleJournal of clinical immunology2024

Inherited CARD9 Deficiency Due to a Founder Effect in East Asia.

Dan Tomomasa, Beom Hee Lee, Yuki Hirata, Yuzaburo Inoue, Hidetaka Majima, Yusuke Imanaka, Takaki Asano, Takashi Katakami, Jina Lee, Atsushi Hijikata and 13 more

Abstract readCase Reports
In one paragraph

Article in Journal of clinical immunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Human immunity to fungal infections.The Journal of experimental medicine · 2025
    Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Dan Tomomasa *Department of Pediatrics and Developmental Biology, Tokyo Medical and Dental University (TMDU), Tokyo, Japan.
Beom Hee Lee *Department of Pediatrics, Medical Genetics Center, Asan Medical Center Children's Hospital, University of Ulsan College of Medicine, 88 Olympic-Ro 43-Gil, Songpa-Gu, Seoul, 05505, South Korea. bhlee@amc.seoul.kr.
Yuki HirataDepartment of Opthalmology, Shonan Fujisawa Tokushukai Hospital, Kanagawa, Japan.
Yuzaburo InoueDepartment of General Medical Science, Graduate School of Medicine, Chiba University, Chiba, Japan.
Hidetaka MajimaMedical Mycology Research Center, Chiba University, Chiba, Japan.
Yusuke ImanakaDepartment of Pediatrics, Hiroshima University Hospital, Hiroshima, Japan.
Takaki AsanoDepartment of Pediatrics, Hiroshima University Graduate School of Biomedical and Health Sciences, Hiroshima, Japan.
Takashi KatakamiDepartment of Neurology, Hyogo Prefectural Amagasaki General Medical Center, Hyogo, Japan.
Jina LeeDepartment of Pediatrics, Medical Genetics Center, Asan Medical Center Children's Hospital, University of Ulsan College of Medicine, 88 Olympic-Ro 43-Gil, Songpa-Gu, Seoul, 05505, South Korea.
Atsushi HijikataSchool of Life Sciences, Tokyo University of Pharmacy and Life Sciences, Tokyo, Japan.
Wittawin WorakitchanonDepartment of Human Genetics, School of International Health, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Xi YangDepartment of Rheumatology and Immunology, Children's Hospital of Chongqing Medical University, Chongqing, China.
Xiaowen WangDepartment of Dermatology, Peking University First Hospital, Beijing, China.
Akira WatanabeMedical Mycology Research Center, Chiba University, Chiba, Japan.
Katsuhiko KameiMedical Mycology Research Center, Chiba University, Chiba, Japan.
Yasufumi KageyamaDepartment of Neurology, Hyogo Prefectural Amagasaki General Medical Center, Hyogo, Japan.
Go Hun Seo3Billion Inc, Seoul, South Korea.
Akihiro FujimotoDepartment of Human Genetics, School of International Health, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Jean-Laurent CasanovaLaboratory of Human Genetics of Infectious Diseases, Necker Branch, UMR 1163, INSERM, Necker Hospital for Sick Children, 75015, Paris, France.
Anne PuelLaboratory of Human Genetics of Infectious Diseases, Necker Branch, UMR 1163, INSERM, Necker Hospital for Sick Children, 75015, Paris, France.
Tomohiro MorioDepartment of Pediatrics and Developmental Biology, Tokyo Medical and Dental University (TMDU), Tokyo, Japan.
Satoshi OkadaDepartment of Pediatrics, Hiroshima University Graduate School of Biomedical and Health Sciences, Hiroshima, Japan.
Hirokazu Kanegane *Department of Child Health and Development, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University (TMDU), 1-5-45 Yushima, Bunkyo-Ku, Tokyo, 113-8519, Japan. hkanegane.ped@tmd.ac.jp.ORCID 0000-0002-8696-9378

Funding

Genome-wide search for inborn errors of IL-17 immunity underlying chronic mucocutaneous candidiasisR01AI127564 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI Jean-Laurent Casanova · 2017 to 2026
$4.8M
AMED JP23ek0109623French National Research Agency (ANR) under the "Investments for the Future" program ANR-10-IAHU-01MEXT/JSPS KAKENHI 22H03041MEXT/JSPS KAKENHI 22K07887MEXT/JSPS KAKENHI 22KK0113NIAID NIH HHS R01 AI127564NIH HHS # R01AI127564the ANR-FNS LTh-MSMDCMCD ANR-18-CE93-0008-01the French Foundation for Medical Research (FRM) EQU201903007798the Integrative Biology of Emerging Infectious Diseases Laboratory of Excellence ANR-10-LABX-62-IBEIDthe National Institutes of Health R01AI127564
6 · The paper itself

Abstract

Autosomal recessive CARD9 deficiency can underly deep and superficial fungal diseases. We identified two Japanese patients, suffering from superficial and invasive Candida albicans diseases, carrying biallelic variants of CARD9. Both patients, in addition to another Japanese and two Korean patients who were previously reported, carried the c.820dup CARD9 variant, either in the homozygous (two patients) or heterozygous (three patients) state. The other CARD9 alleles were c.104G > A, c.1534C > T and c.1558del. The c.820dup CARD9 variant has thus been reported, in the homozygous or heterozygous state, in patients originating from China, Japan, or South Korea. The Japanese, Korean, and Chinese patients share a 10 Kb haplotype encompassing the c.820dup CARD9 variant. This variant thus originates from a common ancestor, estimated to have lived less than 4,000 years ago. While phaeohyphomycosis caused by Phialophora spp. was common in the Chinese patients, none of the five patients in our study displayed Phialophora spp.-induced disease. This difference between Chinese and our patients probably results from environmental factors. (161/250).

Indexed as

CARD Signaling Adaptor ProteinsFounder EffectAdultAllelesCandida albicansCandidiasis, Chronic MucocutaneousEast Asian PeopleFemaleHaplotypesHumansMaleMutationPedigreeCARD9 protein, humanCARD Signaling Adaptor Proteinsc.820dup variantCandida spp.CARD9 deficiencycentral nervous systemEast Asiafounder effectfungal diseasesphaeohyphomycosisPhialophora spp.

Identifiers

PMID38758287
PMCPMC11736695

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.