Evidence map›Paper›PMID 38756222›Full record

ArticleDigital discovery2024

Benchmarking machine-readable vectors of chemical reactions on computed activation barriers.

Puck van Gerwen, Ksenia R Briling, Yannick Calvino Alonso, Malte Franke, Clemence Corminboeuf

Abstract read
In one paragraph

Article in Digital discovery, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. 3DReact: Geometric Deep Learning for Chemical Reactions.Journal of chemical information and modeling · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Puck van GerwenLaboratory for Computational Molecular Design, Institute of Chemical Sciences and Engineering, École Polytechnique Fédérale de Lausanne 1015 Lausanne Switzerland clemence.corminboeuf@epfl.ch.ORCID https://orcid.org/0000-0002-7992-5529
Ksenia R BrilingLaboratory for Computational Molecular Design, Institute of Chemical Sciences and Engineering, École Polytechnique Fédérale de Lausanne 1015 Lausanne Switzerland clemence.corminboeuf@epfl.ch.ORCID https://orcid.org/0000-0003-2250-9898
Yannick Calvino AlonsoLaboratory for Computational Molecular Design, Institute of Chemical Sciences and Engineering, École Polytechnique Fédérale de Lausanne 1015 Lausanne Switzerland clemence.corminboeuf@epfl.ch.ORCID https://orcid.org/0009-0008-9573-7772
Malte FrankeLaboratory for Computational Molecular Design, Institute of Chemical Sciences and Engineering, École Polytechnique Fédérale de Lausanne 1015 Lausanne Switzerland clemence.corminboeuf@epfl.ch.
Clemence CorminboeufLaboratory for Computational Molecular Design, Institute of Chemical Sciences and Engineering, École Polytechnique Fédérale de Lausanne 1015 Lausanne Switzerland clemence.corminboeuf@epfl.ch.ORCID https://orcid.org/0000-0001-7993-2879

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In recent years, there has been a surge of interest in predicting computed activation barriers, to enable the acceleration of the automated exploration of reaction networks. Consequently, various predictive approaches have emerged, ranging from graph-based models to methods based on the three-dimensional structure of reactants and products. In tandem, many representations have been developed to predict experimental targets, which may hold promise for barrier prediction as well. Here, we bring together all of these efforts and benchmark various methods (Morgan fingerprints, the DRFP, the CGR representation-based Chemprop, SLATM

Identifiers

PMID38756222
PMCPMC11094696

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.