Evidence map›Paper›PMID 38755447›Full record

ReviewNature protocols2024

A template wizard for the cocreation of machine-readable data-reporting to harmonize the evaluation of (nano)materials.

Nina Jeliazkova, Eleonora Longhin, Naouale El Yamani, Elise Rundén-Pran, Elisa Moschini, Tommaso Serchi, Ivana Vinković Vrček, Michael J Burgum, Shareen H Doak, Mihaela Roxana Cimpan and 28 more

Abstract readReview
PubMed Publisher
In one paragraph

Review in Nature protocols, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. CompSafeNano project: NanoInformatics approaches for safe-by-design nanomaterials.Computational and structural biotechnology journal · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

38 authors.

Nina JeliazkovaIdeaconsult Ltd., Sofia, Bulgaria.ORCID 0000-0002-4322-6179
Eleonora LonghinHealth Effects Laboratory, Department of Environmental Chemistry & Health Effects, The Climate and Environmental Research Institute NILU, Kjeller, Norway.
Naouale El YamaniHealth Effects Laboratory, Department of Environmental Chemistry & Health Effects, The Climate and Environmental Research Institute NILU, Kjeller, Norway.
Elise Rundén-PranHealth Effects Laboratory, Department of Environmental Chemistry & Health Effects, The Climate and Environmental Research Institute NILU, Kjeller, Norway.ORCID 0000-0002-5541-4513
Elisa MoschiniEnvironmental Health group, Department of Environmental Research and Innovation, Luxembourg Institute of Science and Technology, Belvaux, Luxembourg.
Tommaso SerchiEnvironmental Health group, Department of Environmental Research and Innovation, Luxembourg Institute of Science and Technology, Belvaux, Luxembourg.
Ivana Vinković VrčekInstitute for Medical Research and Occupational Health, Zagreb, Croatia.
Michael J BurgumIn Vitro Toxicology Group, Faculty of Medicine, Health and Life Sciences, Institute of Life Sciences, Swansea University Medical School, Singleton Park, Swansea, Wales, UK.
Shareen H DoakIn Vitro Toxicology Group, Faculty of Medicine, Health and Life Sciences, Institute of Life Sciences, Swansea University Medical School, Singleton Park, Swansea, Wales, UK.
Mihaela Roxana CimpanDepartment of Clinical Dentistry, University of Bergen, Bergen, Norway.ORCID 0000-0003-2029-3173
Ivan Rios-MondragonDepartment of Clinical Dentistry, University of Bergen, Bergen, Norway.
Emil CimpanDepartment of Computer Science, Electrical Engineering and Mathematical Sciences, Western Norway University of Applied Sciences, Bergen, Norway.
Chiara L BattistelliEnvironment and Health Department, Istituto Superiore di Sanità, Rome, Italy.
Cecilia BossaEnvironment and Health Department, Istituto Superiore di Sanità, Rome, Italy.
Rositsa TsekovskaMedical and Biological Research Laboratory, Roumen Tsanev Institute of Molecular Biology-Bulgarian Academy of Sciences, Sofia, Bulgaria.ORCID 0000-0001-5431-5743
Damjana DrobneDepartment of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.
Sara NovakDepartment of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.
Neža ReparDepartment of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.
Ammar AmmarDepartment of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands.ORCID 0000-0002-8399-8990
Penny NymarkInstitute of Environmental Medicine, Karolinska Institutet, Stockholm, Sweden.ORCID 0000-0002-3435-7775
Veronica Di BattistaBASF SE, Material Physics, Carl Bosch straße, Ludwigshafen, Germany.
Anita SosnowskaQSAR Lab Ltd., Gdańsk, Poland.
Tomasz PuzynQSAR Lab Ltd., Gdańsk, Poland.
Nikolay KochevIdeaconsult Ltd., Sofia, Bulgaria.
Luchesar IlievIdeaconsult Ltd., Sofia, Bulgaria.ORCID 0000-0001-7000-8890
Vedrin JeliazkovIdeaconsult Ltd., Sofia, Bulgaria.
Katie ReillySchool of Geography, Earth and Environmental Sciences, University of Birmingham, Birmingham, UK.ORCID 0000-0002-6054-0645
Iseult LynchSchool of Geography, Earth and Environmental Sciences, University of Birmingham, Birmingham, UK.ORCID 0000-0003-4250-4584
Martine BakkerNational Institute for Public Health and the Environment, Bilthoven, the Netherlands.ORCID 0000-0001-8379-7016
Camila DelpivoLEITAT Technological Centre, Barcelona, Spain.
Araceli Sánchez JiménezSpanish National Institute of Health and Safety, Centro Nacional de Verificación de Maquinaria, Barakaldo, Spain.ORCID 0000-0002-2625-9155
Ana Sofia FonsecaNational Research Centre for the Working Environment, Copenhagen, Denmark.
Nicolas ManierEcotoxicology of Substances and Environmental Matrices Unit, French National Institute for Industrial Environment and Risks, Verneuil-en-Halatte, France.ORCID 0000-0003-3873-6657
María Luisa Fernandez-CruzDepartment of Environment and Agronomy, National Institute for Agriculture and Food Research and Technology, Spanish National Research Council, Madrid, Spain.ORCID 0000-0001-5988-1939
Shahzad RashidInstitute of Occupational Medicine, Research Avenue North, Edinburgh, UK.
Egon WillighagenDepartment of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands.ORCID 0000-0001-7542-0286
Margarita D ApostolovaMedical and Biological Research Laboratory, Roumen Tsanev Institute of Molecular Biology-Bulgarian Academy of Sciences, Sofia, Bulgaria.ORCID 0000-0001-7188-506X
Maria DusinskaHealth Effects Laboratory, Department of Environmental Chemistry & Health Effects, The Climate and Environmental Research Institute NILU, Kjeller, Norway. mdu@nilu.no.ORCID 0000-0003-1358-1652

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Making research data findable, accessible, interoperable and reusable (FAIR) is typically hampered by a lack of skills in technical aspects of data management by data generators and a lack of resources. We developed a Template Wizard for researchers to easily create templates suitable for consistently capturing data and metadata from their experiments. The templates are easy to use and enable the compilation of machine-readable metadata to accompany data generation and align them to existing community standards and databases, such as eNanoMapper, streamlining the adoption of the FAIR principles. These templates are citable objects and are available as online tools. The Template Wizard is designed to be user friendly and facilitates using and reusing existing templates for new projects or project extensions. The wizard is accompanied by an online template validator, which allows self-evaluation of the template (to ensure mapping to the data schema and machine readability of the captured data) and transformation by an open-source parser into machine-readable formats, compliant with the FAIR principles. The templates are based on extensive collective experience in nanosafety data collection and include over 60 harmonized data entry templates for physicochemical characterization and hazard assessment (cell viability, genotoxicity, environmental organism dose-response tests, omics), as well as exposure and release studies. The templates are generalizable across fields and have already been extended and adapted for microplastics and advanced materials research. The harmonized templates improve the reliability of interlaboratory comparisons, data reuse and meta-analyses and can facilitate the safety evaluation and regulation process for (nano) materials.

Indexed as

NanostructuresMetadataSoftware

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.