Evidence map›Paper›PMID 38755298›Full record

ArticleNature structural & molecular biology2024

The LexA-RecA* structure reveals a cryptic lock-and-key mechanism for SOS activation.

Michael B Cory, Allen Li, Christina M Hurley, Peter J Carman, Ruth A Pumroy, Zachary M Hostetler, Ryann M Perez, Yarra Venkatesh, Xinning Li, Kushol Gupta and 2 more

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
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  5. Review
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  10. Review
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  15. Article
  16. Article
  17. Article
  18. Snapshots ofiScience · 2025
    Article
  19. Review
  20. The expression regulation ofFrontiers in microbiology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Michael B CoryGraduate Group in Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-2509-2939
Allen LiDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0003-4519-450X
Christina M HurleyGraduate Group in Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-8821-7233
Peter J CarmanGraduate Group in Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA, USA.
Ruth A PumroyDepartment of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA, USA.
Zachary M HostetlerDepartment of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Ryann M PerezDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA, USA.
Yarra VenkateshDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA, USA.
Xinning LiDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA, USA.
Kushol GuptaDepartment of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-7006-2667
E James PeterssonDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA, USA. ejpetersson@sas.upenn.edu.ORCID http://orcid.org/0000-0003-3854-9210
Rahul M KohliDepartment of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA, USA. rkohli@pennmedicine.upenn.edu.ORCID http://orcid.org/0000-0002-7689-5678

Funding

Predoctoral Training at the Chemistry-Biology InterfaceT32GM133398 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI Ronen Marmorstein, Ernest James Petersson · 2020 to 2026
$2.4M
Combined Adult and Pediatric Infectious Disease Postdoctoral Training GrantT32AI118684 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI Rahul Manu Kohli, Audrey Ragan Odom John · 2016 to 2026
$2.3M
Training in Microbial Pathogenesis and GenomicsT32AI141393 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI GOULIAN, MARK D, ZHU, JUN · 2019 to 2023
$1.3M
The Molecular Basis for the Bacterial SOS SignalR01GM127593 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI KOHLI, RAHUL MANU, PETERSSON, ERNEST JAMES · 2018 to 2021
$1.2M
Bruker RapifleX MALDI TOF/TOF Mass SpectrometerS10OD030460 · OD · UNIVERSITY OF PENNSYLVANIA · PI PETERSSON, ERNEST JAMES · 2021 to 2021
$881k
NIAID NIH HHS T32 AI118684NIAID NIH HHS T32 AI141393NIGMS NIH HHS R01 GM127593NIGMS NIH HHS T32 GM133398NIH HHS S10 OD030460
6 · The paper itself

Abstract

The bacterial SOS response plays a key role in adaptation to DNA damage, including genomic stress caused by antibiotics. SOS induction begins when activated RecA*, an oligomeric nucleoprotein filament that forms on single-stranded DNA, binds to and stimulates autoproteolysis of the repressor LexA. Here, we present the structure of the complete Escherichia coli SOS signal complex, constituting full-length LexA bound to RecA*. We uncover an extensive interface unexpectedly including the LexA DNA-binding domain, providing a new molecular rationale for ordered SOS gene induction. We further find that the interface involves three RecA subunits, with a single residue in the central engaged subunit acting as a molecular key, inserting into an allosteric binding pocket to induce LexA cleavage. Given the pro-mutagenic nature of SOS activation, our structural and mechanistic insights provide a foundation for developing new therapeutics to slow the evolution of antibiotic resistance.

Indexed as

Bacterial ProteinsEscherichia coliEscherichia coli ProteinsModels, MolecularRec A RecombinasesSerine EndopeptidasesSOS Response, GeneticsCrystallography, X-RayDNA-Binding ProteinsLexA Repressor ProteinProtein BindingProtein ConformationBacterial ProteinsDNA-Binding ProteinsEscherichia coli ProteinsLexA Repressor ProteinrecA protein, E coliRec A RecombinasesSerine Endopeptidases

Identifiers

PMID38755298
PMCPMC11521096

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.