Evidence map›Paper›PMID 38755257›Full record

ArticleThe EMBO journal2024

Receptor-mediated cargo hitchhiking on bulk autophagy.

Eigo Takeda, Takahiro Isoda, Sachiko Hosokawa, Yu Oikawa, Shukun Hotta-Ren, Alexander I May, Yoshinori Ohsumi

Abstract read
In one paragraph

Article in The EMBO journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Core principles of autophagy initiation mechanisms.Nature structural & molecular biology · 2026
    Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. A hitchhiker's guide to autophagy.The EMBO journal · 2024
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Eigo TakedaCell Biology Center, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama, Japan. takeda@igm.hokudai.ac.jp.ORCID http://orcid.org/0009-0002-3143-6109
Takahiro IsodaCell Biology Center, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama, Japan.ORCID http://orcid.org/0009-0001-7804-0243
Sachiko HosokawaCell Biology Center, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama, Japan.
Yu OikawaCell Biology Center, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama, Japan.
Shukun Hotta-RenCell Biology Center, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama, Japan.
Alexander I MayCell Biology Center, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama, Japan.ORCID http://orcid.org/0000-0002-3758-1545
Yoshinori OhsumiCell Biology Center, Institute of Innovative Research, Tokyo Institute of Technology, Yokohama, Japan. ohsumi.y.aa@m.titech.ac.jp.ORCID http://orcid.org/0000-0003-2384-2166

Funding

MEXT | Japan Society for the Promotion of Science (JSPS) 16H06375MEXT | Japan Society for the Promotion of Science (JSPS) 19H05708MEXT | Japan Society for the Promotion of Science (JSPS) 19K06634MEXT | Japan Society for the Promotion of Science (JSPS) 19K16121MEXT | Japan Society for the Promotion of Science (JSPS) 22K15101
6 · The paper itself

Abstract

While the molecular mechanism of autophagy is well studied, the cargoes delivered by autophagy remain incompletely characterized. To examine the selectivity of autophagy cargo, we conducted proteomics on isolated yeast autophagic bodies, which are intermediate structures in the autophagy process. We identify a protein, Hab1, that is highly preferentially delivered to vacuoles. The N-terminal 42 amino acid region of Hab1 contains an amphipathic helix and an Atg8-family interacting motif, both of which are necessary and sufficient for the preferential delivery of Hab1 by autophagy. We find that fusion of this region with a cytosolic protein results in preferential delivery of this protein to the vacuole. Furthermore, attachment of this region to an organelle allows for autophagic delivery in a manner independent of canonical autophagy receptor or scaffold proteins. We propose a novel mode of selective autophagy in which a receptor, in this case Hab1, binds directly to forming isolation membranes during bulk autophagy.

Indexed as

AutophagySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAutophagy-Related Protein 8 FamilyProtein TransportProteomicsVacuolesAutophagy-Related Protein 8 FamilySaccharomyces cerevisiae ProteinsAtg8AutophagyHab1Saccharomyces cerevisiaeSelective Autophagy

Identifiers

PMID38755257
PMCPMC11294605

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.