Evidence map›Paper›PMID 38755148›Full record

ArticleNature communications2024

Zero-shot learning enables instant denoising and super-resolution in optical fluorescence microscopy.

Chang Qiao, Yunmin Zeng, Quan Meng, Xingye Chen, Haoyu Chen, Tao Jiang, Rongfei Wei, Jiabao Guo, Wenfeng Fu, Huaide Lu and 6 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Chang Qiao *Department of Automation, Tsinghua University, 100084, Beijing, China.ORCID http://orcid.org/0000-0002-6037-0842
Yunmin Zeng *Department of Automation, Tsinghua University, 100084, Beijing, China.ORCID http://orcid.org/0009-0005-4082-4391
Quan Meng *National Laboratory of Biomacromolecules, New Cornerstone Science Laboratory, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, 100101, Beijing, China.
Xingye Chen *Department of Automation, Tsinghua University, 100084, Beijing, China.
Haoyu ChenNational Laboratory of Biomacromolecules, New Cornerstone Science Laboratory, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, 100101, Beijing, China.
Tao JiangNational Laboratory of Biomacromolecules, New Cornerstone Science Laboratory, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, 100101, Beijing, China.
Rongfei WeiNational Laboratory of Biomacromolecules, New Cornerstone Science Laboratory, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, 100101, Beijing, China.
Jiabao GuoNational Laboratory of Biomacromolecules, New Cornerstone Science Laboratory, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, 100101, Beijing, China.
Wenfeng FuNational Laboratory of Biomacromolecules, New Cornerstone Science Laboratory, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, 100101, Beijing, China.
Huaide LuNational Laboratory of Biomacromolecules, New Cornerstone Science Laboratory, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, 100101, Beijing, China.
Di LiNational Laboratory of Biomacromolecules, New Cornerstone Science Laboratory, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, 100101, Beijing, China.ORCID http://orcid.org/0000-0001-9331-265X
Yuwang WangBeijing National Research Center for Information Science and Technology, Tsinghua University, 100084, Beijing, China.ORCID http://orcid.org/0000-0002-6880-959X
Hui QiaoDepartment of Automation, Tsinghua University, 100084, Beijing, China.ORCID http://orcid.org/0000-0002-4896-8657
Jiamin WuDepartment of Automation, Tsinghua University, 100084, Beijing, China.ORCID http://orcid.org/0000-0003-3479-1026
Dong LiNational Laboratory of Biomacromolecules, New Cornerstone Science Laboratory, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, 100101, Beijing, China. lidong@ibp.ac.cn.ORCID http://orcid.org/0000-0001-6787-5125
Qionghai DaiDepartment of Automation, Tsinghua University, 100084, Beijing, China. qhdai@tsinghua.edu.cn.ORCID http://orcid.org/0000-0001-7043-3061

Funding

China Postdoctoral Science Foundation 2022M721842China Postdoctoral Science Foundation 2023T160365Ministry of Science and Technology of the People's Republic of China (Chinese Ministry of Science and Technology) 2021YFA1300303National Natural Science Foundation of China (National Science Foundation of China) 2020AA0105500
6 · The paper itself

Abstract

Computational super-resolution methods, including conventional analytical algorithms and deep learning models, have substantially improved optical microscopy. Among them, supervised deep neural networks have demonstrated outstanding performance, however, demanding abundant high-quality training data, which are laborious and even impractical to acquire due to the high dynamics of living cells. Here, we develop zero-shot deconvolution networks (ZS-DeconvNet) that instantly enhance the resolution of microscope images by more than 1.5-fold over the diffraction limit with 10-fold lower fluorescence than ordinary super-resolution imaging conditions, in an unsupervised manner without the need for either ground truths or additional data acquisition. We demonstrate the versatile applicability of ZS-DeconvNet on multiple imaging modalities, including total internal reflection fluorescence microscopy, three-dimensional wide-field microscopy, confocal microscopy, two-photon microscopy, lattice light-sheet microscopy, and multimodal structured illumination microscopy, which enables multi-color, long-term, super-resolution 2D/3D imaging of subcellular bioprocesses from mitotic single cells to multicellular embryos of mouse and C. elegans.

Indexed as

Caenorhabditis elegansMicroscopy, FluorescenceAlgorithmsAnimalsDeep LearningImage Processing, Computer-AssistedImaging, Three-DimensionalMice

Identifiers

PMID38755148
PMCPMC11099110

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.