Evidence map›Paper›PMID 38755126›Full record

ArticleNature communications2024

Conserved regulatory switches for the transition from natal down to juvenile feather in birds.

Chih-Kuan Chen, Yao-Ming Chang, Ting-Xin Jiang, ZhiCao Yue, Tzu-Yu Liu, Jiayi Lu, Zhou Yu, Jinn-Jy Lin, Trieu-Duc Vu, Tao-Yu Huang and 5 more

Erratum issuedAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors.

Chih-Kuan ChenDepartment of Pathology, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0002-0962-1589
Yao-Ming ChangInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.ORCID http://orcid.org/0000-0002-6618-862X
Ting-Xin JiangDepartment of Pathology, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA.
ZhiCao YueDepartment of Cell Biology and Medical Genetics, Shenzhen University Medical School, Shenzhen, Guangdong, China.ORCID http://orcid.org/0000-0001-5729-3842
Tzu-Yu LiuDepartment of Pathology, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA.ORCID http://orcid.org/0009-0002-1792-5053
Jiayi LuDepartment of Pathology, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA.
Zhou YuDepartment of Pathology, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA.
Jinn-Jy LinNational Applied Research Laboratories, National Center for High-performance Computing, Hsinchu, Taiwan.ORCID http://orcid.org/0000-0002-3619-181X
Trieu-Duc VuMichigan Neuroscience Institute, University of Michigan School of Medicine, Ann Arbor, MI, USA.
Tao-Yu HuangBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Hans I-Chen HarnDepartment of Pathology, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA.
Chen Siang NgThe iEGG and Animal Biotechnology Center, National Chung Hsing University, Taichung, Taiwan.
Ping WuDepartment of Pathology, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0003-0035-8494
Cheng-Ming ChuongDepartment of Pathology, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA. cmchuong@usc.edu.ORCID http://orcid.org/0000-0001-9673-3994
Wen-Hsiung LiBiodiversity Research Center, Academia Sinica, Taipei, Taiwan. whli@uchicago.edu.ORCID http://orcid.org/0000-0003-2757-5026

Funding

Size regulation of skin appendagesR01AR047364 · NIAMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Cheng-Ming Chuong · 2002 to 2026
$10.1M
Tissue Engineering of New Hair FormationR01AR060306 · NIAMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHUONG, CHENG-MING · 2010 to 2019
$4.6M
Tissue Patterning in living skin and organ explantsR37AR060306 · NIAMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Cheng-Ming Chuong · 2020 to 2026
$3.6M
Multi-scale modulation of organ adaptationR35GM153402 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Cheng-Ming Chuong · 2024 to 2026
$1.2M
SMALL INSTRUMENTATION GRANTS15AG012756 · NIA · GALLAUDET UNIVERSITY · PI REVOILE, SALLY G · 1994 to 1994
–
California Institute for Regenerative Medicine (CIRM) EDUC4-12756NIAMS NIH HHS R01 AR047364NIAMS NIH HHS R01 AR060306NIAMS NIH HHS R37 AR060306NIGMS NIH HHS R35 GM153402U.S. Department of Health & Human Services | NIH | National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIAMS) R37 AR 060306U.S. Department of Health & Human Services | NIH | National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIAMS) RO1 AR 047364
6 · The paper itself

Abstract

The transition from natal downs for heat conservation to juvenile feathers for simple flight is a remarkable environmental adaptation process in avian evolution. However, the underlying epigenetic mechanism for this primary feather transition is mostly unknown. Here we conducted time-ordered gene co-expression network construction, epigenetic analysis, and functional perturbations in developing feather follicles to elucidate four downy-juvenile feather transition events. We report that extracellular matrix reorganization leads to peripheral pulp formation, which mediates epithelial-mesenchymal interactions for branching morphogenesis. α-SMA (ACTA2) compartmentalizes dermal papilla stem cells for feather renewal cycling. LEF1 works as a key hub of Wnt signaling to build rachis and converts radial downy to bilateral symmetry. Novel usage of scale keratins strengthens feather sheath with SOX14 as the epigenetic regulator. We show that this primary feather transition is largely conserved in chicken (precocial) and zebra finch (altricial) and discuss the possibility that this evolutionary adaptation process started in feathered dinosaurs.

Indexed as

ChickensFeathersFinchesAnimalsBiological EvolutionEpigenesis, GeneticExtracellular MatrixGene Expression Regulation, DevelopmentalGene Regulatory NetworksKeratinsMorphogenesisWnt Signaling PathwayKeratins

Identifiers

PMID38755126
PMCPMC11099144

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.