Evidence map›Paper›PMID 38753216›Full record

ArticleArchives of virology2024

Complete genome sequence of a novel totivirus isolated from the leaves of Myrica rubra.

Weihao Luo, Lizhen Zhang, Lei Zhang, Xian Dong, Pengzhang Ji, Kuo Wu, Jiahong Dong

Abstract read
PubMed Publisher
In one paragraph

Article in Archives of virology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Weihao LuoInstitute of Medicinal Plant Cultivation, School of Chinese Materia Medica and Yunnan Key Laboratory of Southern Medicinal Resource, Yunnan University of Chinese Medicine, Kunming, 650500, Yunnan, China.
Lizhen ZhangBiotechnology and Germplasm Resources Institute, Yunnan Academy of Agricultural Sciences, Kunming, 650205, Yunnan, China.
Lei ZhangInstitute of Medicinal Plant Cultivation, School of Chinese Materia Medica and Yunnan Key Laboratory of Southern Medicinal Resource, Yunnan University of Chinese Medicine, Kunming, 650500, Yunnan, China.
Xian DongInstitute of Medicinal Plant Cultivation, School of Chinese Materia Medica and Yunnan Key Laboratory of Southern Medicinal Resource, Yunnan University of Chinese Medicine, Kunming, 650500, Yunnan, China.
Pengzhang JiInstitute of Medicinal Plant Cultivation, School of Chinese Materia Medica and Yunnan Key Laboratory of Southern Medicinal Resource, Yunnan University of Chinese Medicine, Kunming, 650500, Yunnan, China.
Kuo WuBiotechnology and Germplasm Resources Institute, Yunnan Academy of Agricultural Sciences, Kunming, 650205, Yunnan, China. yklaw@126.com.
Jiahong DongInstitute of Medicinal Plant Cultivation, School of Chinese Materia Medica and Yunnan Key Laboratory of Southern Medicinal Resource, Yunnan University of Chinese Medicine, Kunming, 650500, Yunnan, China. dongjhn@126.com.ORCID http://orcid.org/0000-0002-8067-4691

Funding

High Level Talents Project of Yunnan University of Chinese Medicine 2019YZG09Yunnan Provincial Science and Technology Department-Applied Basic Research Joint Special Funds of Yunnan University of Chinese Medicine 202101AZ070001-011
6 · The paper itself

Abstract

Chinese bayberry is a fruit that is appreciated for its taste. A novel totivirus associated with rolling, disfiguring, chlorotic and vein-clearing symptoms on the leaf apices of Chinese bayberry was identified by transcriptome sequencing and reverse transcription PCR (RT-PCR). The complete genome of the virus was determined to be 4959 nucleotides long, and it contains two open reading frames (ORFs). Its genomic organization is similar to that of previously reported totiviruses. ORF1 encodes a putative coat protein (CP) of 765 aa, and ORF2 encodes an RNA-dependent RNA polymerase (RdRp) of 815 aa. These two putative proteins share 55.1% and 62.6%, amino acid sequence identity, respectively, with the corresponding proteins of Panax notoginseng virus A, respectively. According to the demarcation criteria for totivirus species established by the International Committee on Taxonomy of Viruses (ICTV), the new virus should be considered a member of a new species in the genus totivirus, family Orthototiviridae, which we have tentatively named ''Myrica rubra-associated totivirus'' (MRaTV).

Indexed as

Genome, ViralMyricaOpen Reading FramesPhylogenyPlant DiseasesPlant LeavesTotivirusWhole Genome SequencingRNA-Dependent RNA PolymeraseRNA, ViralViral ProteinsRNA-Dependent RNA PolymeraseRNA, ViralViral Proteins

Identifiers

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.