Evidence map›Paper›PMID 38753140›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2024

On-Chip Magnetic Extraction of Circulating Cell-Free DNA from Biological Samples.

Karla Perez-Toralla, Iago Pereiro, Sonia Garrigou, Fahima Di Federico, Monica Araya-Farias, Charlotte Proudhon, François-Clémént Bidard, Jean-Louis Viovy, Valérie Taly, Stéphanie Descroix

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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Karla Perez-TorallaUniversité Paris-Saclay, CEA, INRAE, Médicaments et Technologies pour la Santé (MTS), SPI, Gif-sur-Yvette, France. karla.pereztoralla@cea.fr.
Iago PereiroSorbonne Universités, UPMC Univ Paris 06, Paris, France.
Sonia GarrigouUniversité Sorbonne Paris Cité, INSERM UMRS 1147, CNRS SNC, Translational Research and Microfluidics, Equipe labellisée Ligue Nationale Contre le Cancer, Paris, France.
Fahima Di FedericoSorbonne Universités, UPMC Univ Paris 06, Paris, France.
Monica Araya-FariasUniversité Paris-Saclay, CEA, INRAE, Médicaments et Technologies pour la Santé (MTS), SPI, Gif-sur-Yvette, France.
Charlotte ProudhonUniv Rennes, Inserm, EHESP, Irset (Institut de recherche en santé, environnement et travail) - UMR_S 1085, Rennes, France.
François-Clémént BidardCirculating Tumor Biomarkers Laboratory, SiRIC, Translational Research Department, Institut Curie, PSL Research University, Paris, France.
Jean-Louis ViovySorbonne Universités, UPMC Univ Paris 06, Paris, France.
Valérie TalyUniversité Paris Cité, Centre de recherche des Cordeliers, INSERM, UMR-S1138, CNRS SNC 5096, Paris, France.
Stéphanie DescroixInstitut Curie, UMR 168, Institut Pierre-Gilles de Gennes, Paris, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In recent years, the analysis of circulating cell-free DNA (cfDNA) containing tumor-derived DNA has emerged as a noninvasive means for cancer monitoring and personalized medicine. However, the isolation of cfDNA from peripheral blood has remained a challenge due to the low abundance and high fragmentation of these molecules. Here, we present a dynamic Magnetic ExTRactiOn (METRO) protocol using microfluidic fluidized bed technology to isolate circulating cfDNA from raw biological materials such as undiluted serum. This protocol maximizes the surface area for DNA binding within the chip in order to capture short DNA fragments. It uses only a few μL of sample and reagents. The protocol can be automated, and it is fully compatible with sensitive DNA amplification methods such as droplet-based digital PCR (ddPCR).

Indexed as

Cell-Free Nucleic AcidsLab-On-A-Chip DevicesHumansMagneticsMicrofluidic Analytical TechniquesNeoplasmsPolymerase Chain ReactionCell-Free Nucleic AcidsCancerCirculating cell-free DNACirculating tumor DNAMicrofluidic fluidized bedSolid-phase extraction

Identifiers

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.