Evidence map›Paper›PMID 38753082›Full record

ArticleArchives of virology2024

Detection and genetic analysis of bovine rhinitis B virus in Japan.

Hiroho Ishida, Mikari Nakamura, Hironobu Murakami, Kei Kazama, Mami Oba, Hitoshi Takemae, Tetsuya Mizutani, Yoshinao Ouchi, Junko Kawakami, Satoko Tsuzuku and 1 more

Abstract read
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Article in Archives of virology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Hiroho IshidaSchool of Veterinary Medicine, Azabu University, Sagamihara, Kanagawa, Japan. ishida@azabu-u.ac.jp.ORCID http://orcid.org/0000-0003-4314-199X
Mikari NakamuraSchool of Veterinary Medicine, Azabu University, Sagamihara, Kanagawa, Japan.
Hironobu MurakamiSchool of Veterinary Medicine, Azabu University, Sagamihara, Kanagawa, Japan.
Kei KazamaSchool of Veterinary Medicine, Azabu University, Sagamihara, Kanagawa, Japan.
Mami ObaSchool of Veterinary Medicine, Azabu University, Sagamihara, Kanagawa, Japan.
Hitoshi TakemaeCenter for Infectious Disease Epidemiology and Prevention Research, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, Japan.
Tetsuya MizutaniCenter for Infectious Disease Epidemiology and Prevention Research, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, Japan.
Yoshinao OuchiBeef Cattle Institute, Ibaraki Prefecture of Livestock Research Center, Hitachi-Omiya, Ibaraki, Japan.
Junko KawakamiIbaraki Prefecture Kennan Livestock Hygiene Service Center, Tsuchiura, Ibaraki, Japan.
Satoko TsuzukuIbaraki Prefecture Kennan Livestock Hygiene Service Center, Tsuchiura, Ibaraki, Japan.
Makoto NagaiSchool of Veterinary Medicine, Azabu University, Sagamihara, Kanagawa, Japan.

Funding

Japan Society for the Promotion of Science 22K20619Japan Society for the Promotion of Science 23K14097
6 · The paper itself

Abstract

Bovine rhinitis B virus (BRBV) (genus Aphthovirus, family Picornaviridae) is a significant etiological agent of the bovine respiratory disease complex. Despite global reports on BRBV, genomic data for Japanese strains are not available. In this study, we aimed to obtain genomic information on BRBV in Japan and analyze its genetic characteristics. In nasal swabs from 66 cattle, BRBV was detected in 6 out of 10 symptomatic and 4 out of 56 asymptomatic cattle. Using metagenomic sequencing and Sanger sequencing, the nearly complete genome sequences of two Japanese BRBV strains, IBA/2211/2 and LAV/238002, from symptomatic and asymptomatic cattle, respectively, were determined. These viruses shared significant genetic similarity with known BRBV strains and exhibited unique mutations and recombination events, indicating dynamic evolution, influenced by regional environmental and biological factors. Notably, the leader gene was only approximately 80% and 90% identical in its nucleotide and amino acid sequence, respectively, to all of the BRBV strains with sequences in the GenBank database, indicating significant genetic divergence in the Japanese BRBV leader gene. These findings provide insights into the genetic makeup of Japanese BRBV strains, enriching our understanding of their genetic diversity and evolutionary mechanisms.

Indexed as

AphthovirusCattle DiseasesGenome, ViralPhylogenyAnimalsCattleGenetic VariationJapanMetagenomicsPicornaviridae Infections

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.