Evidence map›Paper›PMID 38753033›Full record

ArticleWorld journal of microbiology & biotechnology2024

Understanding the transition to viable but non-culturable state in Escherichia coli W3110: a comprehensive analysis of potential spectrochemical biomarkers.

Özge Kaygusuz İzgördü, Rafig Gurbanov, Cihan Darcan

Abstract read
In one paragraph

Article in World journal of microbiology & biotechnology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Özge Kaygusuz İzgördüBiotechnology Application and Research Center, Bilecik Şeyh Edebali University, Bilecik, Turkey.ORCID http://orcid.org/0000-0002-3652-4266
Rafig GurbanovDepartment of Bioengineering, Bilecik Şeyh Edebali University, Bilecik, Turkey. rafig.gurbanov@bilecik.edu.tr.ORCID http://orcid.org/0000-0003-0205-3774
Cihan DarcanDepartment of Molecular Biology and Genetics, Bilecik Şeyh Edebali University, Bilecik, Turkey.ORCID http://orcid.org/0000-0002-5293-6447

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The viable but non-culturable (VBNC) state is considered a survival strategy employed by bacteria to endure stressful conditions, allowing them to stay alive. Bacteria in this state remain unnoticed in live cell counts as they cannot proliferate in standard culture media. VBNC cells pose a significant health risk because they retain their virulence and can revive when conditions normalize. Hence, it is crucial to develop fast, reliable, and cost-effective methods to detect bacteria in the VBNC state, particularly in the context of public health, food safety, and microbial control assessments. This research examined the biomolecular changes in Escherichia coli W3110 induced into the VBNC state in artificial seawater under three different stress conditions (temperature, metal, and antibiotic). Initially, confirmation of VBNC cells under various stresses was done using fluorescence microscopy and plate counts. Subsequently, lipid peroxidation was assessed through the TBARS assay, revealing a notable increase in peroxidation end-products in VBNC cells compared to controls. ATR-FTIR spectroscopy and chemomometrics were employed to analyze biomolecular changes, uncovering significant spectral differences in RNA, protein, and nucleic acid concentrations in VBNC cells compared to controls. Notably, RNA levels increased, while protein and nucleic acid amounts decreased. ROC analyses identified the 995 cm

Indexed as

BiomarkersEscherichia coliLipid PeroxidationMicrobial ViabilityAnti-Bacterial AgentsCulture MediaEscherichia coli ProteinsSeawaterSpectroscopy, Fourier Transform InfraredStress, PhysiologicalTemperatureAnti-Bacterial AgentsBiomarkersCulture MediaEscherichia coli ProteinsCopperE. coli W3110ErythromycinInfrared spectroscopyViable but non-culturable (VBNC)

Identifiers

PMID38753033
PMCPMC11098925

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.