Evidence map›Paper›PMID 38752399›Full record

ArticleGenome biology and evolution2024

Expression of Truncated Products at the 5'-Terminal Region of RIPK2 and Evolutive Aspects that Support Their Biological Importance.

Ulises M M Villagra, Bianca R da Cunha, Giovana M Polachini, Tiago Henrique, Ana Carolina Buzzo Stefanini, Tialfi Bergamin de Castro, Carlos H T P da Silva, Olavo A Feitosa, Erica E Fukuyama, Rossana V M López and 4 more

Abstract read
In one paragraph

Article in Genome biology and evolution, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Ulises M M VillagraFaculty of Exact Sciences, Biotechnology and Molecular Biology Institute (IBBM), National University of La Plata-CCT, CONICET, La Plata, Argentina.
Bianca R da CunhaDepartment of Molecular Biology, School of Medicine of São José do Rio Preto/FAMERP, São José do Rio Preto, SP, Brazil.
Giovana M PolachiniDepartment of Molecular Biology, School of Medicine of São José do Rio Preto/FAMERP, São José do Rio Preto, SP, Brazil.
Tiago HenriqueDepartment of Molecular Biology, School of Medicine of São José do Rio Preto/FAMERP, São José do Rio Preto, SP, Brazil.
Ana Carolina Buzzo StefaniniDepartment of Genetics and Evolutionary Biology, Institute of Biosciences, University of São Paulo/USP, São Paulo, SP, Brazil.
Tialfi Bergamin de CastroDepartment of Molecular Biology, School of Medicine of São José do Rio Preto/FAMERP, São José do Rio Preto, SP, Brazil.
Carlos H T P da SilvaComputational Laboratory of Pharmaceutical Chemistry, School of Pharmaceutical Sciences of Ribeirão Preto, University of São Paulo/USP, Ribeirão Preto, SP, Brazil.
Olavo A FeitosaComputational Laboratory of Pharmaceutical Chemistry, School of Pharmaceutical Sciences of Ribeirão Preto, University of São Paulo/USP, Ribeirão Preto, SP, Brazil.
Erica E FukuyamaHead and Neck Surgery Department, Arnaldo Vieira de Carvalho Cancer Institute, São Paulo, SP, Brazil.
Rossana V M LópezComprehensive Center for Precision Oncology, Center for Translational Research in Oncology, State of São Paulo Cancer Institute-ICESP, Clinics Hospital, Sao Paulo University Medical School, São Paulo, SP, Brazil.
Emmanuel Dias-NetoLaboratory of Medical Genomics, A.C. Camargo Cancer Center, São Paulo, SP, Brazil.
Fabio D NunesDepartment of Stomatology, School of Dentistry, University of São Paulo/USP, São Paulo, SP, Brazil.
Patricia SeverinoDepartment of Genetics and Evolutionary Biology, Institute of Biosciences, University of São Paulo/USP, São Paulo, SP, Brazil.
Eloiza H TajaraDepartment of Molecular Biology, School of Medicine of São José do Rio Preto/FAMERP, São José do Rio Preto, SP, Brazil.ORCID 0000-0002-2603-2057

Funding

Conselho Nacional de Pesquisas 308904/2014-1Fundação de Amparo à Pesquisa do Estado de São Paulo 10/51168-0
6 · The paper itself

Abstract

Alternative splicing is the process of generating different mRNAs from the same primary transcript, which contributes to increase the transcriptome and proteome diversity. Abnormal splicing has been associated with the development of several diseases including cancer. Given that mutations and abnormal levels of the RIPK2 transcript and RIP-2 protein are frequent in tumors, and that RIP-2 modulates immune and inflammatory responses, we investigated alternative splicing events that result in partial deletions of the kinase domain at the N-terminus of RIP-2. We also investigated the structure and expression of the RIPK2 truncated variants and isoforms in different environments. In addition, we searched data throughout Supraprimates evolution that could support the biological importance of RIPK2 alternatively spliced products. We observed that human variants and isoforms were differentially regulated following temperature stress, and that the truncated transcript was more expressed than the long transcript in tumor samples. The inverse was found for the longer protein isoform. The truncated variant was also detected in chimpanzee, gorilla, hare, pika, mouse, rat, and tree shrew. The fact that the same variant has been preserved in mammals with divergence times up to 70 million years raises the hypothesis that it may have a functional significance.

Indexed as

Alternative SplicingReceptor-Interacting Protein Serine-Threonine Kinase 2AnimalsEvolution, MolecularHumansMiceNeoplasmsProtein IsoformsRatsProtein IsoformsReceptor-Interacting Protein Serine-Threonine Kinase 2RIPK2 protein, humanalternative splicinggene expressionisoform conservationRIP-2RIPK2stress conditions

Identifiers

PMID38752399
PMCPMC11221433

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.