Evidence map›Paper›PMID 38752165›Full record

ArticleProceedings of SPIE--the International Society for Optical Engineering2024

Enhancing Colorectal Cancer Tumor Bud Detection Using Deep Learning from Routine H&E-Stained Slides.

Usama Sajjad, Wei Chen, Mostafa Rezapour, Ziyu Su, Thomas Tavolara, Wendy L Frankel, Metin N Gurcan, M Khalid Khan Niazi

Abstract read
In one paragraph

Article in Proceedings of SPIE--the International Society for Optical Engineering, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Beyond H&E: CDX2 immunohistochemistry in tumor budding assessment of colorectal carcinoma.Romanian journal of morphology and embryology = Revue roumaine de morphologie et embryologie
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Usama SajjadCenter for Artificial Intelligence Research, Wake Forest University School of Medicine, Winston-Salem, NC, USA.
Wei ChenDepartment of Pathology, The Ohio State University, Columbus, OH, USA.
Mostafa RezapourCenter for Artificial Intelligence Research, Wake Forest University School of Medicine, Winston-Salem, NC, USA.
Ziyu SuCenter for Artificial Intelligence Research, Wake Forest University School of Medicine, Winston-Salem, NC, USA.
Thomas TavolaraDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA.
Wendy L FrankelDepartment of Pathology, The Ohio State University, Columbus, OH, USA.
Metin N GurcanCenter for Artificial Intelligence Research, Wake Forest University School of Medicine, Winston-Salem, NC, USA.
M Khalid Khan NiaziCenter for Artificial Intelligence Research, Wake Forest University School of Medicine, Winston-Salem, NC, USA.

Funding

Computer-assisted diagnosis of ear pathologies by combining digital otoscopy with complementary data using machine learningR01DC020715 · NIDCD · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Metin Nafi Gurcan, Aaron C Moberly · 2023 to 2026
$2.5M
An ensemble deep learning model for tumor bud detection and risk stratification in colorectal carcinoma.R01CA276301 · NCI · OHIO STATE UNIVERSITY · PI Wei Chen, Muhammad Khalid Khan Niazi · 2023 to 2026
$2.0M
Development of quantitative tools to predict patients with difficult intubation to minimize treatment related complicationsR21EB029493 · NIBIB · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI NIAZI, MUHAMMAD KHALID KHAN, SEGAL, SCOTT · 2021 to 2023
$620k
Efficient and cost-effective breast cancer risk stratification using whole slide histopathology imagesR21CA273665 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI GURCAN, METIN NAFI · 2023 to 2024
$394k
NCI NIH HHS R01 CA276301NCI NIH HHS R21 CA273665NIBIB NIH HHS R21 EB029493NIDCD NIH HHS R01 DC020715
6 · The paper itself

Abstract

Tumor budding refers to a cluster of one to four tumor cells located at the tumor-invasive front. While tumor budding is a prognostic factor for colorectal cancer, counting and grading tumor budding are time consuming and not highly reproducible. There could be high inter- and intra-reader disagreement on H&E evaluation. This leads to the noisy training (imperfect ground truth) of deep learning algorithms, resulting in high variability and losing their ability to generalize on unseen datasets. Pan-cytokeratin staining is one of the potential solutions to enhance the agreement, but it is not routinely used to identify tumor buds and can lead to false positives. Therefore, we aim to develop a weakly-supervised deep learning method for tumor bud detection from routine H&E-stained images that does not require strict tissue-level annotations. We also propose

Indexed as

classificationcolorectal cancerdeep learningtumor budding

Identifiers

PMID38752165
PMCPMC11095418

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.