Evidence map›Paper›PMID 38750113›Full record

ArticleBritish journal of cancer2024

Persistence and enrichment of dominant T cell clonotypes in expanded tumor-infiltrating lymphocytes of breast cancer.

Baknoon Ham, Su Yeon Kim, Young-Ae Kim, DoYeon Han, Taehyun Park, Sumin Cha, SungWook Jung, Jong Hyeok Kim, Gisung Park, Gyungyub Gong and 2 more

Abstract read
In one paragraph

Article in British journal of cancer, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Baknoon Ham *NeogenTC Corp., Seoul, 05505, Republic of Korea.
Su Yeon Kim *University of Ulsan College of Medicine, Seoul, 05505, Republic of Korea.
Young-Ae KimNeogenTC Corp., Seoul, 05505, Republic of Korea.
DoYeon HanDepartment of Medical Science, AMIST, Asan Medical Center, University of Ulsan College of Medicine, Seoul, 05505, Republic of Korea.
Taehyun ParkDepartment of Medical Science, AMIST, Asan Medical Center, University of Ulsan College of Medicine, Seoul, 05505, Republic of Korea.
Sumin ChaDepartment of Medical Science, AMIST, Asan Medical Center, University of Ulsan College of Medicine, Seoul, 05505, Republic of Korea.
SungWook JungDepartment of Medical Science, AMIST, Asan Medical Center, University of Ulsan College of Medicine, Seoul, 05505, Republic of Korea.
Jong Hyeok KimDepartment of Medical Science, AMIST, Asan Medical Center, University of Ulsan College of Medicine, Seoul, 05505, Republic of Korea.
Gisung ParkDepartment of Medical Science, AMIST, Asan Medical Center, University of Ulsan College of Medicine, Seoul, 05505, Republic of Korea.
Gyungyub GongDepartment of Pathology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, 05505, Republic of Korea. gygong@amc.seoul.kr.
Hee Jin LeeNeogenTC Corp., Seoul, 05505, Republic of Korea. backlila@gmail.com.ORCID 0000-0002-4963-6603
Junyoung ShinDepartment of Pathology, National Cancer Center, Ilsan, 10408, Republic of Korea. tworaccoons@ncc.re.kr.

Funding

Asan Institute for Life Sciences, Asan Medical Center 2018IL0169
6 · The paper itself

Abstract

backgroundAdoptive cell therapy using tumor-infiltrating lymphocytes (TILs) has shown promising results in cancer treatment, including breast cancer. However, clonal dynamics and clinical significance of TIL expansion ex vivo remain poorly understood.

methodsWe investigated T cell receptor (TCR) repertoire changes in expanded TILs from 19 patients with breast cancer. We compared TCR repertoire of TILs at different stages of expansion, including initial (2W TILs) and rapid expansion (REP TILs), and their overlap with formalin fixed paraffin embedded (FFPE) and peripheral blood. Additionally, we examined differences in TCR repertoire between CD4+ and CD8+ REP TILs.

resultsIn descending order of proportion, average of 60% of the top 10% clonotypes of FFPE was retained in 2W TIL (60% in TRB, 64.7% in TRA). Among the overlapped clonotypes between 2W TILs and REP TILs, 69.9% was placed in top 30% of 2W TIL. The proportion of clonotypes in 2W TIL and REP TIL showed a significant positive correlation. CD4+ and CD8+ T cells show similar results in diversity and CDR3 length.

conclusionsOur study traces the changes in TILs repertoire from FFPE to 2W TIL and REP TIL and confirmed that clonotypes with high frequencies in TILs have a high likelihood of maintaining their priority throughout culture process.

Indexed as

Breast NeoplasmsCD8-Positive T-LymphocytesLymphocytes, Tumor-InfiltratingAdultAgedCD4-Positive T-LymphocytesClone CellsFemaleHumansMiddle AgedReceptors, Antigen, T-CellReceptors, Antigen, T-Cell

Identifiers

PMID38750113
PMCPMC11231331

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.