Evidence map›Paper›PMID 38750015›Full record

ArticleNature communications2024

Post-translational modification-dependent oligomerization switch in regulation of global transcription and DNA damage repair during genotoxic stress.

Prathama Talukdar, Sujay Pal, Debabrata Biswas

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
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  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Prathama TalukdarCSIR-Indian Institute of Chemical Biology, Kolkata, 700032, India.
Sujay PalCSIR-Indian Institute of Chemical Biology, Kolkata, 700032, India.
Debabrata BiswasCSIR-Indian Institute of Chemical Biology, Kolkata, 700032, India. dbiswas@iicb.res.in.ORCID http://orcid.org/0000-0002-6782-6398

Funding

Council of Scientific and Industrial Research (CSIR) P-07DBT India Alliance (Wellcome Trust/DBT India Alliance) IA/S/22/1/506227DBT-Wellcome Trust India Alliance IA/S/22/1/506227Wellcome Trust
6 · The paper itself

Abstract

Mechanisms of functional cross-talk between global transcriptional repression and efficient DNA damage repair during genotoxic stress are poorly known. In this study, using human AF9 as representative of Super Elongation Complex (SEC) components, we delineate detailed mechanisms of these processes. Mechanistically, we describe that Poly-Serine domain-mediated oligomerization is pre-requisite for AF9 YEATS domain-mediated TFIID interaction-dependent SEC recruitment at the promoter-proximal region for release of paused RNA polymerase II. Interestingly, during genotoxic stress, CaMKII-mediated phosphorylation-dependent nuclear export of AF9-specific deacetylase HDAC5 enhances concomitant PCAF-mediated acetylation of K339 residue. This causes monomerization of AF9 and reduces TFIID interaction for transcriptional downregulation. Furthermore, the K339 acetylation-dependent enhanced AF9-DNA-PKc interaction leads to phosphorylation at S395 residue which reduces AF9-SEC interaction resulting in transcriptional downregulation and efficient repair of DNA damage. After repair, nuclear re-entry of HDAC5 reduces AF9 acetylation and restores its TFIID and SEC interaction to restart transcription.

Indexed as

DNA DamageDNA RepairHistone DeacetylasesProtein Processing, Post-TranslationalTranscription, GeneticAcetylationHEK293 CellsHeLa CellsHumansPhosphorylationProtein MultimerizationRNA Polymerase IITranscriptional Elongation FactorsTranscription Factor TFIIDHistone DeacetylasesRNA Polymerase IITranscriptional Elongation FactorsTranscription Factor TFIID

Identifiers

PMID38750015
PMCPMC11096357

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.