Evidence map›Paper›PMID 38748755›Full record

ArticlePLoS computational biology2024

Structural and practical identifiability of contrast transport models for DCE-MRI.

Martina Conte, Ryan T Woodall, Margarita Gutova, Bihong T Chen, Mark S Shiroishi, Christine E Brown, Jennifer M Munson, Russell C Rockne

Abstract read
In one paragraph

Article in PLoS computational biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Martina ConteDepartment of Mathematical Sciences "G. L. Lagrange", Politecnico di Torino, Torino, Italy.ORCID 0000-0002-8477-3267
Ryan T WoodallDivision of Mathematical Oncology and Computational Systems Biology, Department of Computational and Quantitative Medicine, Beckman Research Institute, City of Hope National Medical Center, Duarte, California, United States of America.ORCID 0000-0002-7978-8341
Margarita GutovaDepartment of Stem Cell Biology and Regenerative Medicine, Beckman Research Institute, City of Hope National Medical Center, Duarte, California, United States of America.
Bihong T ChenDepartment of Diagnostic Radiology, City of Hope National Medical Center, Duarte, California, United States of America.
Mark S ShiroishiDepartment of Radiology, Keck School of Medicine of the University of Southern California, Los Angeles, California, United States of America.
Christine E BrownDepartments of Hematology & Hematopoietic Cell Transplantation and Immuno-Oncology, Beckman Research Institute, City of Hope National Medical Center Duarte, California, United States of America.
Jennifer M MunsonFralin Biomedical Research Institute, Virginia Tech, Roanoke, Virginia, United States of America.
Russell C RockneDivision of Mathematical Oncology and Computational Systems Biology, Department of Computational and Quantitative Medicine, Beckman Research Institute, City of Hope National Medical Center, Duarte, California, United States of America.ORCID 0000-0002-1557-159X

Funding

Transgenic Mouse FacilityP30CA033572 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI John Charles Williams · 1985 to 2026
$86.3M
Clinical Evaluation of Chlorotoxin-redirected Chimeric Antigen Receptor (CAR) T cells for Treatment of GlioblastomaR01CA254271 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI BADIE, BEHNAM, BROWN, CHRISTINE · 2020 to 2024
$3.7M
The impact of interstitial fluid flow on CAR T cell trafficking, distribution, and efficacyR01NS115971 · NINDS · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI BROWN, CHRISTINE, MUNSON, JENNIFER M · 2021 to 2025
$3.3M
NCI NIH HHS P30 CA033572NCI NIH HHS R01 CA254271NINDS NIH HHS R01 NS115971
6 · The paper itself

Abstract

Contrast transport models are widely used to quantify blood flow and transport in dynamic contrast-enhanced magnetic resonance imaging. These models analyze the time course of the contrast agent concentration, providing diagnostic and prognostic value for many biological systems. Thus, ensuring accuracy and repeatability of the model parameter estimation is a fundamental concern. In this work, we analyze the structural and practical identifiability of a class of nested compartment models pervasively used in analysis of MRI data. We combine artificial and real data to study the role of noise in model parameter estimation. We observe that although all the models are structurally identifiable, practical identifiability strongly depends on the data characteristics. We analyze the impact of increasing data noise on parameter identifiability and show how the latter can be recovered with increased data quality. To complete the analysis, we show that the results do not depend on specific tissue characteristics or the type of enhancement patterns of contrast agent signal.

Indexed as

Contrast MediaMagnetic Resonance ImagingComputational BiologyComputer SimulationHumansModels, BiologicalContrast Media

Identifiers

PMID38748755
PMCPMC11132485

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.