Evidence map›Paper›PMID 38748285›Full record

ArticleJournal of cancer research and clinical oncology2024

Utilizing a structure-based virtual screening approach to discover potential LSD1 inhibitors.

Zhehao Fan, Xiaofeng Liu, Ning Wang, Shiyi Yu, Caili Bi, Yue Si, Xinyue Ling, Chenxu Liu, Jingcheng Wang, Haibo Sun

Abstract read
In one paragraph

Article in Journal of cancer research and clinical oncology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Zhehao Fan *Institute of Translational Medicine, Medical College, Yangzhou University, Jiangyangzhonglu No. 136, Yangzhou, Jiangsu, China.
Xiaofeng Liu *Internal Medicine Department, Haian Hospital of Traditional Chinese Medicine, Nantong, China.
Ning Wang *Institute of Translational Medicine, Medical College, Yangzhou University, Jiangyangzhonglu No. 136, Yangzhou, Jiangsu, China.
Shiyi YuInstitute of Translational Medicine, Medical College, Yangzhou University, Jiangyangzhonglu No. 136, Yangzhou, Jiangsu, China.
Caili BiInstitute of Translational Medicine, Medical College, Yangzhou University, Jiangyangzhonglu No. 136, Yangzhou, Jiangsu, China.
Yue SiInstitute of Translational Medicine, Medical College, Yangzhou University, Jiangyangzhonglu No. 136, Yangzhou, Jiangsu, China.
Xinyue LingInstitute of Translational Medicine, Medical College, Yangzhou University, Jiangyangzhonglu No. 136, Yangzhou, Jiangsu, China.
Chenxu LiuInstitute of Translational Medicine, Medical College, Yangzhou University, Jiangyangzhonglu No. 136, Yangzhou, Jiangsu, China.
Jingcheng WangYangzhou University Affiliated Northern Jiangsu People's Hospital, Yangzhou, China.
Haibo SunInstitute of Translational Medicine, Medical College, Yangzhou University, Jiangyangzhonglu No. 136, Yangzhou, Jiangsu, China. frenksun@126.com.

Funding

Advanced Talents and Science and Technology Innovation Foundation at Yangzhou University 137011856the National Natural Science Foundation of China 82371877
6 · The paper itself

Abstract

backgroundLysine-specific demethylase 1 (LSD1) is highly expressed in a variety of malignant tumors, rendering it a crucial epigenetic target for anti-tumor therapy. Therefore, the inhibition of LSD1 activity has emerged as a promising innovative therapeutic approach for targeted cancer treatment.

methodsIn our study, we employed innovative structure-based drug design methods to meticulously select compounds from the ZINC15 database. Utilizing virtual docking, we evaluated docking scores and binding modes to identify potential inhibitors. To further validate our findings, we harnessed molecular dynamic simulations and conducted meticulous biochemical experiments to deeply analyze the binding interactions between the protein and compounds.

resultsOur results showcased that ZINC10039815 exhibits an exquisite binding mode with LSD1, fitting perfectly into the active pocket and forming robust interactions with multiple critical residues of the protein.

conclusionsWith its significant inhibitory effect on LSD1 activity, ZINC10039815 emerges as a highly promising candidate for the development of novel LSD1 inhibitors.

Indexed as

Enzyme InhibitorsHistone DemethylasesMolecular Docking SimulationAntineoplastic AgentsDrug DesignHumansMolecular Dynamics SimulationNeoplasmsAntineoplastic AgentsEnzyme InhibitorsHistone DemethylasesDockingInhibitorLSD1Molecular dynamics simulation

Identifiers

PMID38748285
PMCPMC11096237

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.