Evidence map›Paper›PMID 38747631›Full record

ArticleMicrobiology spectrum2024

Unlocking the biosynthetic potential and taxonomy of the Antarctic microbiome along temporal and spatial gradients.

William Medeiros, Kelly Hidalgo, Tiago Leão, Lucas Miguel de Carvalho, Nadine Ziemert, Valeria Oliveira

Abstract read
In one paragraph

Article in Microbiology spectrum, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

William MedeirosMicrobial Resources Division, Research Center for Chemistry, Biology, and Agriculture (CPQBA), Universidade Estadual de Campinas (UNICAMP), Paulínia, São Paulo, Brazil.ORCID 0000-0002-1685-1171
Kelly HidalgoMicrobial Resources Division, Research Center for Chemistry, Biology, and Agriculture (CPQBA), Universidade Estadual de Campinas (UNICAMP), Paulínia, São Paulo, Brazil.
Tiago LeãoChemistry Institute, São Paulo State University (UNESP), Araraquara, São Paulo, Brazil.
Lucas Miguel de CarvalhoCenter for Computing in Engineering and Sciences, Universidade Estadual de Campinas (UNICAMP), Campinas, São Paulo, Brazil.
Nadine ZiemertInterfaculty Institute of Microbiology, and Infection Medicine Institute for Bioinformatics and Medical Informatics, German Centre for Infection Research (DZIF), Tübingen, Germany.
Valeria OliveiraMicrobial Resources Division, Research Center for Chemistry, Biology, and Agriculture (CPQBA), Universidade Estadual de Campinas (UNICAMP), Paulínia, São Paulo, Brazil.ORCID 0000-0001-8817-4758

Funding

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) 2019/12914-3Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) 2020/11534-0, 2022/15112-8
6 · The paper itself

Abstract

Extreme environments, such as Antarctica, select microbial communities that display a range of evolutionary strategies to survive and thrive under harsh environmental conditions. These include a diversity of specialized metabolites, which have the potential to be a source for new natural product discovery. Efforts using (meta)genome mining approaches to identify and understand biosynthetic gene clusters in Antarctica are still scarce, and the extent of their diversity and distribution patterns in the environment have yet to be discovered. Herein, we investigated the biosynthetic gene diversity of the biofilm microbial community of Whalers Bay, Deception Island, in the Antarctic Peninsula and revealed its distribution patterns along spatial and temporal gradients by applying metagenome mining approaches and multivariable analysis. The results showed that the Whalers Bay microbial community harbors a great diversity of biosynthetic gene clusters distributed into seven classes, with terpene being the most abundant. The phyla Proteobacteria and Bacteroidota were the most abundant in the microbial community and contributed significantly to the biosynthetic gene abundances in Whalers Bay. Furthermore, the results highlighted a significant correlation between the distribution of biosynthetic genes and taxonomic diversity, emphasizing the intricate interplay between microbial taxonomy and their potential for specialized metabolite production.IMPORTANCEThis research on antarctic microbial biosynthetic diversity in Whalers Bay, Deception Island, unveils the hidden potential of extreme environments for natural product discovery. By employing metagenomic techniques, the research highlights the extensive diversity of biosynthetic gene clusters and identifies key microbial phyla, Proteobacteria and Bacteroidota, as significant contributors. The correlation between taxonomic diversity and biosynthetic gene distribution underscores the intricate interplay governing specialized metabolite production. These findings are crucial for understanding microbial adaptation in extreme environments and hold significant implications for bioprospecting initiatives. The study opens avenues for discovering novel bioactive compounds with potential applications in medicine and industry, emphasizing the importance of preserving and exploring these polyextreme ecosystems to advance biotechnological and pharmaceutical research.

Indexed as

MetagenomeMicrobiotaAntarctic RegionsBacteriaBacteroidetesBiofilmsMultigene FamilyPhylogenyProteobacteriaTerpenesTerpenesAntarctic environmentsbiosynthetic gene clustersmetagenome miningWhalers Bay

Identifiers

PMID38747631
PMCPMC11237469

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.