Evidence map›Paper›PMID 38747603›Full record

ArticlemSystems2024

Characteristics and immune functions of the endogenous CRISPR-Cas systems in myxobacteria.

Wei-Feng Hu, Jiang-Yu Yang, Jing-Jing Wang, Shu-Fei Yuan, Xin-Jing Yue, Zheng Zhang, Ya-Qi Zhang, Jun-Yan Meng, Yue-Zhong Li

Abstract read
In one paragraph

Article in mSystems, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Wei-Feng HuState Key Laboratory of Microbial Technology, Institute of Microbial Technology, Shandong University, Qingdao, China.ORCID 0000-0002-4941-658X
Jiang-Yu YangState Key Laboratory of Microbial Technology, Institute of Microbial Technology, Shandong University, Qingdao, China.
Jing-Jing WangState Key Laboratory of Microbial Technology, Institute of Microbial Technology, Shandong University, Qingdao, China.
Shu-Fei YuanState Key Laboratory of Microbial Technology, Institute of Microbial Technology, Shandong University, Qingdao, China.
Xin-Jing YueState Key Laboratory of Microbial Technology, Institute of Microbial Technology, Shandong University, Qingdao, China.
Zheng ZhangState Key Laboratory of Microbial Technology, Institute of Microbial Technology, Shandong University, Qingdao, China.ORCID 0000-0001-9971-6006
Ya-Qi ZhangState Key Laboratory of Microbial Technology, Institute of Microbial Technology, Shandong University, Qingdao, China.
Jun-Yan MengState Key Laboratory of Microbial Technology, Institute of Microbial Technology, Shandong University, Qingdao, China.
Yue-Zhong LiState Key Laboratory of Microbial Technology, Institute of Microbial Technology, Shandong University, Qingdao, China.ORCID 0000-0001-8336-6638

Funding

MOST | National Key Research and Development Program of China (NKPs) 2018YFA0900400MOST | National Key Research and Development Program of China (NKPs) 2018YFA0901704MOST | National Key Research and Development Program of China (NKPs) 2021YFC2101000MOST | National Natural Science Foundation of China (NSFC) 32070030| Natural Science Foundation of Shandong Province () ZR2019BC041
6 · The paper itself

Abstract

The clustered regularly interspaced short palindromic repeats and their associated proteins (CRISPR-Cas) system widely occurs in prokaryotic organisms to recognize and destruct genetic invaders. Systematic collation and characterization of endogenous CRISPR-Cas systems are conducive to our understanding and potential utilization of this natural genetic machinery. In this study, we screened 39 complete and 692 incomplete genomes of myxobacteria using a combined strategy to dispose of the abridged genome information and revealed at least 19 CRISPR-Cas subtypes, which were distributed with a taxonomic difference and often lost stochastically in intraspecies strains. The IMPORTANCE: Serving as an adaptive immune system, clustered regularly interspaced short palindromic repeats and their associated proteins (CRISPR-Cas) empower prokaryotes to fend off the intrusion of external genetic materials. Myxobacteria are a collective of swarming Gram-stain-negative predatory bacteria distinguished by intricate multicellular social behavior. An in-depth analysis of their intrinsic CRISPR-Cas systems is beneficial for our understanding of the survival strategies employed by host cells within their environmental niches. Moreover, the experimental findings presented in this study not only suggest the robust immune functions of CRISPR-Cas in myxobacteria but also their potential applications.

Indexed as

CRISPR-Cas SystemsGenome, BacterialMyxococcalesClustered Regularly Interspaced Short Palindromic RepeatsPhylogenyCRISPR-CasimmunitymyxobacteriaMyxococcus xanthustarget tracing

Identifiers

PMID38747603
PMCPMC11237760

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.