Evidence map›Paper›PMID 38747379›Full record

ArticleProtein science : a publication of the Protein Society2024

A salt bridge of the C-terminal carboxyl group regulates PHPT1 substrate affinity and catalytic activity.

Erik Zavala, Stephen Dansereau, Michael J Burke, James M Lipchock, Federica Maschietto, Victor Batista, J Patrick Loria

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Inhibition of PHPT1 by phenylarsonic acids.Dalton transactions (Cambridge, England : 2003) · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Erik ZavalaDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, USA.ORCID 0000-0001-6293-3461
Stephen DansereauDepartment of Chemistry, Yale University, New Haven, Connecticut, USA.
Michael J BurkeDepartment of Chemistry, Yale University, New Haven, Connecticut, USA.
James M LipchockDepartment of Chemical and Biological Sciences, Montgomery College, Germantown, Maryland, USA.
Federica MaschiettoDepartment of Chemistry, Yale University, New Haven, Connecticut, USA.
Victor BatistaDepartment of Chemistry, Yale University, New Haven, Connecticut, USA.
J Patrick LoriaDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, USA.

Funding

Mechanism of catalytic regulation and active site loop motions in related protein tyrosine phosphatasesR01GM112781 · NIGMS · YALE UNIVERSITY · PI LORIA, JOSEPH P · 2015 to 2024
$2.8M
NIGMS NIH HHS R01 GM112781NIH HHS R01 GM112781
6 · The paper itself

Abstract

PHPT1 is a histidine phosphatase that modulates signaling in eukaryotes through its catalytic activity. Here, we present an analysis of the structure and dynamics of PHPT1 through a combination of solution NMR, molecular dynamics, and biochemical experiments. We identify a salt bridge formed between the R78 guanidinium moiety and the C-terminal carboxyl group on Y125 that is critical for ligand binding. Disruption of the salt bridge by appending a glycine residue at the C-terminus (G126) leads to a decrease in catalytic activity and binding affinity for the pseudo substrate, para-nitrophenylphosphate (pNPP), as well as the active site inhibitor, phenylphosphonic acid (PPA). We show through NMR chemical shift,

Indexed as

Catalytic DomainMolecular Dynamics SimulationHumansNuclear Magnetic Resonance, BiomolecularPhosphoric Monoester HydrolasesSubstrate SpecificityPhosphoric Monoester HydrolasesPHPT1 protein, humancatalysiselectrostaticsmolecular dynamics simulationsNMRphosphatasesstructural dynamics

Identifiers

PMID38747379
PMCPMC11094782

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.