Evidence map›Paper›PMID 38747009›Full record

ArticleThe plant genome2024

Understanding genome structure facilitates the use of wild lentil germplasm for breeding: A case study with shattering loci.

Zhe Cao, Didier Socquet-Juglard, Ketema Daba, Albert Vandenberg, Kirstin E Bett

Abstract read
In one paragraph

Article in The plant genome, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Zhe CaoDepartment of Plant Sciences, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.
Didier Socquet-JuglardDepartment of Plant Sciences, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.
Ketema DabaDepartment of Plant Sciences, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.
Albert VandenbergDepartment of Plant Sciences, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.
Kirstin E BettDepartment of Plant Sciences, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.ORCID https://orcid.org/0000-0001-7959-6959

Funding

Genome CanadaMinistry of Agriculture - Saskatchewan 20150331Ministry of Agriculture - Saskatchewan 20200026Saskatchewan Pulse GrowersWestern Grains Research Foundation
6 · The paper itself

Abstract

Plant breeders are generally reluctant to cross elite crop cultivars with their wild relatives to introgress novel desirable traits due to associated negative traits such as pod shattering. This results in a genetic bottleneck that could be reduced through better understanding of the genomic locations of the gene(s) controlling this trait. We integrated information on parental genomes, pod shattering data from multiple environments, and high-density genetic linkage maps to identify pod shattering quantitative trait loci (QTLs) in three lentil interspecific recombinant inbred line populations. The broad-sense heritability on a multi-environment basis varied from 0.46 (in LR-70, Lens culinaris × Lens odemensis) to 0.77 (in LR-68, Lens orientalis × L. culinaris). Genetic linkage maps of the interspecific populations revealed reciprocal translocations of chromosomal segments that differed among the populations, and which were associated with reduced recombination. LR-68 had a 2-5 translocation, LR-70 had 1-5, 2-6, and 2-7 translocations, and LR-86 had a 2-7 translocation in one parent relative to the other. Segregation distortion was also observed for clusters of single nucleotide polymorphisms on multiple chromosomes per population, further affecting introgression. Two major QTL, on chromosomes 4 and 7, were repeatedly detected in the three populations and contain several candidate genes. These findings will be of significant value for lentil breeders to strategically access novel superior alleles while minimizing the genetic impact of pod shattering from wild parents.

Indexed as

Chromosome MappingGenome, PlantLens PlantPlant BreedingQuantitative Trait LociGenetic LinkageSeeds

Identifiers

PMID38747009
PMCPMC12807040

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.