Evidence map›Paper›PMID 38745125›Full record

ArticleBMC plant biology2024

Genomic identification and expression analysis of acid invertase (AINV) gene family in Dendrobium officinale Kimura et Migo.

Yujia Liu, Boting Liu, Kefa Luo, Baiyin Yu, Xiang Li, Jian Zeng, Jie Chen, Rui Xia, Jing Xu, Yuanlong Liu

Abstract read
In one paragraph

Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

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3citing papers in PubMed
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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

10 authors.

Yujia Liu *Guangdong Province Key Laboratory of Utilization and Conservation of Food and Medicinal Resources in Northerrn Region, Shaoguan University, Shaoguan, Guangdong, 512005, China.ORCID http://orcid.org/0000-0002-0406-8569
Boting Liu *College of Biology and Agriculture, Shaoguan University, Shaoguan, Guangdong, 512005, China.ORCID http://orcid.org/0009-0007-8437-2766
Kefa LuoCollege of Biology and Agriculture, Shaoguan University, Shaoguan, Guangdong, 512005, China.
Baiyin YuGuangdong Province Key Laboratory of Utilization and Conservation of Food and Medicinal Resources in Northerrn Region, Shaoguan University, Shaoguan, Guangdong, 512005, China. 540391135@qq.com.
Xiang LiGuangdong Province Key Laboratory of Utilization and Conservation of Food and Medicinal Resources in Northerrn Region, Shaoguan University, Shaoguan, Guangdong, 512005, China.
Jian ZengGuangdong Province Key Laboratory of Utilization and Conservation of Food and Medicinal Resources in Northerrn Region, Shaoguan University, Shaoguan, Guangdong, 512005, China.
Jie ChenGuangdong Province Key Laboratory of Utilization and Conservation of Food and Medicinal Resources in Northerrn Region, Shaoguan University, Shaoguan, Guangdong, 512005, China.
Rui XiaState Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, 510642, China.
Jing XuCollege of Horticulture, South China Agricultural University, Guangzhou, 510642, China. jxu@scau.edu.cn.
Yuanlong LiuGuangdong Province Key Laboratory of Utilization and Conservation of Food and Medicinal Resources in Northerrn Region, Shaoguan University, Shaoguan, Guangdong, 512005, China. liuyuanlong@scau.edu.cn.ORCID http://orcid.org/0000-0003-2907-9069

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDendrobium officinale Kimura et Migo, a renowned traditional Chinese orchid herb esteemed for its significant horticultural and medicinal value, thrives in adverse habitats and contends with various abiotic or biotic stresses. Acid invertases (AINV) are widely considered enzymes involved in regulating sucrose metabolism and have been revealed to participate in plant responses to environmental stress. Although members of AINV gene family have been identified and characterized in multiple plant genomes, detailed information regarding this gene family and its expression patterns remains unknown in D. officinale, despite their significance in polysaccharide biosynthesis.

resultsThis study systematically analyzed the D. officinale genome and identified four DoAINV genes, which were classified into two subfamilies based on subcellular prediction and phylogenetic analysis. Comparison of gene structures and conserved motifs in DoAINV genes indicated a high-level conservation during their evolution history. The conserved amino acids and domains of DoAINV proteins were identified as pivotal for their functional roles. Additionally, cis-elements associated with responses to abiotic and biotic stress were found to be the most prevalent motif in all DoAINV genes, indicating their responsiveness to stress. Furthermore, bioinformatics analysis of transcriptome data, validated by quantitative real-time reverse transcription PCR (qRT-PCR), revealed distinct organ-specific expression patterns of DoAINV genes across various tissues and in response to abiotic stress. Examination of soluble sugar content and interaction networks provided insights into stress release and sucrose metabolism.

conclusionsDoAINV genes are implicated in various activities including growth and development, stress response, and polysaccharide biosynthesis. These findings provide valuable insights into the AINV gene amily of D. officinale and will aid in further elucidating the functions of DoAINV genes.

Indexed as

beta-FructofuranosidaseDendrobiumGene Expression Regulation, PlantMultigene FamilyPhylogenyGene Expression ProfilingGenes, PlantGenome, PlantPlant ProteinsStress, Physiologicalbeta-FructofuranosidasePlant ProteinsAbiotic stressAcid invertaseDendrobium officinaleExpression analysisGenomic identificationProtein–protein interaction

Identifiers

PMID38745125
PMCPMC11092110

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