Evidence map›Paper›PMID 38743625›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Genome-wide CRISPR screens in spheroid culture reveal that the tumor suppressor LKB1 inhibits growth via the PIKFYVE lipid kinase.

John R Ferrarone, Jerin Thomas, Arun M Unni, Yuxiang Zheng, Michal J Nagiec, Eric E Gardner, Oksana Mashadova, Kate Li, Nikos Koundouros, Antonino Montalbano and 5 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

John R FerraroneMeyer Cancer Center, Weill Cornell Medicine, New York, NY 10021.ORCID 0000-0002-2718-3009
Jerin ThomasMeyer Cancer Center, Weill Cornell Medicine, New York, NY 10021.
Arun M UnniMeyer Cancer Center, Weill Cornell Medicine, New York, NY 10021.
Yuxiang ZhengMeyer Cancer Center, Weill Cornell Medicine, New York, NY 10021.
Michal J NagiecMeyer Cancer Center, Weill Cornell Medicine, New York, NY 10021.
Eric E GardnerMeyer Cancer Center, Weill Cornell Medicine, New York, NY 10021.
Oksana MashadovaMeyer Cancer Center, Weill Cornell Medicine, New York, NY 10021.
Kate LiMeyer Cancer Center, Weill Cornell Medicine, New York, NY 10021.
Nikos KoundourosMeyer Cancer Center, Weill Cornell Medicine, New York, NY 10021.
Antonino MontalbanoNew York Genome Center, New York, NY 10013.
Meer MustafaNew York Genome Center, New York, NY 10013.
Lewis C CantleyMeyer Cancer Center, Weill Cornell Medicine, New York, NY 10021.ORCID 0000-0002-1298-7653
John BlenisMeyer Cancer Center, Weill Cornell Medicine, New York, NY 10021.ORCID 0000-0003-3622-2337
Neville E SanjanaNew York Genome Center, New York, NY 10013.ORCID 0000-0002-1504-0027
Harold VarmusMeyer Cancer Center, Weill Cornell Medicine, New York, NY 10021.ORCID 0000-0002-6444-1943

Funding

Role of Phosphoinositides and Protein Kinases in the control of Cancer MetabolismR35CA197588 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI LEWIS C. CANTLEY · 2016 to 2026
$10.2M
Predicting the functional impact of non-coding mutations using patient-specific gene regulatory networksR01CA218668 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI EKTA KHURANA, Neville Sanjana · 2018 to 2026
$4.7M
In situ functional genomics to understand transcriptional regulationDP2HG010099 · NHGRI · NEW YORK GENOME CENTER · PI SANJANA, NEVILLE · 2017 to 2022
$4.4M
LTBR CARs as next-generation therapies for R/R lymphomaR01CA279135 · NCI · NEW YORK GENOME CENTER · PI Catherine Sibyl Diefenbach, Neville Sanjana · 2023 to 2026
$3.2M
Genome engineering tools for functional screening of non-coding elementsR00HG008171 · NHGRI · NEW YORK GENOME CENTER · PI SANJANA, NEVILLE · 2016 to 2018
$733k
Damon Runyon Cancer Research Foundation (DRCRF) DRG 18-18Damon Runyon Cancer Research Foundation (DRCRF) DRG-2343-18HHS | NIH | National Human Genome Research Institute (NHGRI) DP2HG010099HHS | NIH | National Human Genome Research Institute (NHGRI) R00HG008171HHS | NIH | National Human Genome Research Institute (NHGRI) R01CA218668HHS | NIH | National Human Genome Research Institute (NHGRI) R01CA279135HHS | NIH | NCI | CCR | Basic Research Laboratory (BRL) R35CA197588NCI NIH HHS R01 CA218668NCI NIH HHS R01 CA279135NCI NIH HHS R35 CA197588NHGRI NIH HHS DP2 HG010099NHGRI NIH HHS R00 HG008171
6 · The paper itself

Abstract

The tumor suppressor LKB1 is a serine/threonine protein kinase that is frequently mutated in human lung adenocarcinoma (LUAD). LKB1 regulates a complex signaling network that is known to control cell polarity and metabolism; however, the pathways that mediate the tumor-suppressive activity of LKB1 are incompletely defined. To identify mechanisms of LKB1-mediated growth suppression, we developed a spheroid-based cell culture assay to study LKB1-dependent growth. We then performed genome-wide CRISPR screens in spheroidal culture and found that LKB1 suppresses growth, in part, by activating the PIKFYVE lipid kinase. Finally, we used chemical inhibitors and a pH-sensitive reporter to determine that LKB1 impairs growth by promoting the internalization of wild-type EGFR in a PIKFYVE-dependent manner.

Indexed as

AMP-Activated Protein Kinase KinasesPhosphatidylinositol 3-KinasesProtein Serine-Threonine KinasesSpheroids, CellularCell Line, TumorCell ProliferationClustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Cas SystemsHumansLung NeoplasmsAMP-Activated Protein Kinase KinasesPhosphatidylinositol 3-KinasesProtein Serine-Threonine KinasesEGFRLKB1PIKFYVESTK11

Identifiers

PMID38743625
PMCPMC11127050

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.