Evidence map›Paper›PMID 38742019›Full record

ArticleInternational Symposium on String Processing and Information Retrieval : SPIRE ... : proceedings. SPIRE (Symposium)2021

Computing the original eBWT faster, simpler, and with less memory.

Christina Boucher, Davide Cenzato, Zsuzsanna Lipták, Massimiliano Rossi, Marinella Sciortino

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in International Symposium on String Processing and Information Retrieval : SPIRE ... : proceedings. SPIRE (Symposium), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Prefix-free parsing for merging big BWTs.International Symposium on String Processing and Information Retrieval : SPIRE ... : proceedings. SPIRE (Symposium) · 2026
    Article
  3. Article
  4. A survey of BWT variants for string collections.Bioinformatics (Oxford, England) · 2024
    Article
  5. phyBWT2: phylogeny reconstruction via eBWT positional clustering.Algorithms for molecular biology : AMB · 2023
    Article
  6. CSTs for Terabyte-Sized Data.Proceedings. Data Compression Conference · 2022
    Article
  7. r-indexing the eBWT.International Symposium on String Processing and Information Retrieval : SPIRE ... : proceedings. SPIRE (Symposium) · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Christina BoucherDepartment of Computer and Information Science and Engineering, University of Florida, Gainesville, FL, United States.ORCID https://orcid.org/0000-0001-9509-9725
Davide CenzatoDepartment of Computer Science, University of Verona, Verona, Italy.ORCID https://orcid.org/0000-0002-0098-3620
Zsuzsanna LiptákDepartment of Computer Science, University of Verona, Verona, Italy.ORCID https://orcid.org/0000-0002-3233-0691
Massimiliano RossiDepartment of Computer and Information Science and Engineering, University of Florida, Gainesville, FL, United States.ORCID https://orcid.org/0000-0002-3012-1394
Marinella SciortinoDepartment of Computer Science, University of Palermo, Palermo, Italy.ORCID https://orcid.org/0000-0001-6928-0168

Funding

Personal and panel references for improved alignmentR01HG011392 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI LANGMEAD, BENJAMIN THOMAS · 2020 to 2025
$4.2M
Developing Computational Methods for Surveillance of Antimicrobial Resistant AgentsR01AI141810 · NIAID · UNIVERSITY OF FLORIDA · PI BOUCHER, CHRISTINA, PROSPERI, MATTIA · 2019 to 2023
$2.1M
NHGRI NIH HHS R01 HG011392NIAID NIH HHS R01 AI141810
6 · The paper itself

Abstract

Given an input string, the

Indexed as

Data compressionData structures design and analysisextended BWTomega-orderPattern matchingprefix-free parsingSAIS algorithmTheory of computation

Identifiers

PMID38742019
PMCPMC11090109

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.