Evidence map›Paper›PMID 38740753›Full record

ArticleNature communications2024

Coordinated wound responses in a regenerative animal-algal holobiont.

Dania Nanes Sarfati, Yuan Xue, Eun Sun Song, Ashley Byrne, Daniel Le, Spyros Darmanis, Stephen R Quake, Adrien Burlacot, James Sikes, Bo Wang

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Dania Nanes SarfatiDepartment of Biology, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0001-5233-7906
Yuan XueDepartment of Bioengineering, Stanford University, Stanford, CA, USA.
Eun Sun SongDepartment of Applied Physics, Stanford University, Stanford, CA, USA.
Ashley ByrneChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-2177-924X
Daniel LeChan Zuckerberg Biohub, San Francisco, CA, USA.
Spyros DarmanisChan Zuckerberg Biohub, San Francisco, CA, USA.
Stephen R QuakeDepartment of Bioengineering, Stanford University, Stanford, CA, USA.
Adrien BurlacotDepartment of Biology, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0001-7434-6416
James SikesDepartment of Biology, University of San Francisco, San Francisco, CA, USA. jsikes@usfca.edu.ORCID http://orcid.org/0009-0005-5417-2638
Bo WangDepartment of Bioengineering, Stanford University, Stanford, CA, USA. wangbo@stanford.edu.ORCID http://orcid.org/0000-0001-8880-1432

Funding

Comparative systems biology defines regulatory mechanisms in whole-body regenerationR35GM138061 · NIGMS · STANFORD UNIVERSITY · PI Bo Wang · 2020 to 2026
$2.5M
NIGMS NIH HHS R35 GM138061U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) 1R35GM138061
6 · The paper itself

Abstract

Animal regeneration involves coordinated responses across cell types throughout the animal body. In endosymbiotic animals, whether and how symbionts react to host injury and how cellular responses are integrated across species remain unexplored. Here, we study the acoel Convolutriloba longifissura, which hosts symbiotic Tetraselmis sp. green algae and can regenerate entire bodies from tissue fragments. We show that animal injury causes a decline in the photosynthetic efficiency of the symbiotic algae, alongside two distinct, sequential waves of transcriptional responses in acoel and algal cells. The initial algal response is characterized by the upregulation of a cohort of photosynthesis-related genes, though photosynthesis is not necessary for regeneration. A conserved animal transcription factor, runt, is induced after injury and required for acoel regeneration. Knockdown of Cl-runt dampens transcriptional responses in both species and further reduces algal photosynthetic efficiency post-injury. Our results suggest that the holobiont functions as an integrated unit of biological organization by coordinating molecular networks across species through the runt-dependent animal regeneration program.

Indexed as

PhotosynthesisRegenerationSymbiosisAnimalsChlorophytaTranscription FactorsTranscription Factors

Identifiers

PMID38740753
PMCPMC11091193

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.