Evidence map›Paper›PMID 38739272›Full record

ArticleArchives of virology2024

Genome analysis and classification of Xanthomonas bacteriophage AhaSv, a new member of the genus Salvovirus.

Ni An, Qingshan Wu, Zheng Fang, Lan Xiang, Qiuping Liu, Leitao Tan, Qingbei Weng

Abstract read
PubMed Publisher
In one paragraph

Article in Archives of virology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ni AnSchool of Life Sciences, Guizhou Normal University, Guiyang, 550025, People's Republic of China.
Qingshan WuSchool of Life Sciences, Guizhou Normal University, Guiyang, 550025, People's Republic of China.
Zheng FangSchool of Life Sciences, Guizhou Normal University, Guiyang, 550025, People's Republic of China.
Lan XiangQiannan Normal College for Nationalities, Duyun, 558000, People's Republic of China.
Qiuping LiuSchool of Life Sciences, Guizhou Normal University, Guiyang, 550025, People's Republic of China.
Leitao TanSchool of Life Sciences, Guizhou Normal University, Guiyang, 550025, People's Republic of China.
Qingbei WengSchool of Life Sciences, Guizhou Normal University, Guiyang, 550025, People's Republic of China. wengqb@126.com.ORCID http://orcid.org/0000-0003-4244-573X

Funding

Joint Fund of the National Natural Science Foundation of China and the Karst Science Research Center of Guizhou Province U1812401
6 · The paper itself

Abstract

Xanthomonas phage AhaSv was isolated from lake water. Genome sequencing showed that its genome is a linear dsDNA molecule with a length of 55,576 bp and a G+C content of 63.23%. Seventy-one open reading frames (ORFs) were predicted, and no tRNAs were found in the genome. Phylogenetic analysis showed that AhaSv is closely related to members of the genus Salvovirus of the family Casjensviridae. Intergenomic similarity values between phage AhaSv and homologous phages were up to 90.6%, suggesting that phage AhaSv should be considered a member of a new species in the genus Salvovirus.

Indexed as

BacteriophagesGenome, ViralOpen Reading FramesPhylogenyXanthomonasBase CompositionDNA, ViralLakesSequence Analysis, DNADNA, Viral

Identifiers

PMID38739272

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.