Evidence map›Paper›PMID 38738994›Full record

ArticleAging2024

RNA sequencing-based approaches to identifying disulfidptosis-related diagnostic clusters and immune landscapes in osteoporosis.

Peng Zhang, Bing Li, Honglin Chen, Zhilin Ge, Qi Shang, De Liang, Xiang Yu, Hui Ren, Xiaobing Jiang, Jianchao Cui

Abstract read
In one paragraph

Article in Aging, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Peng ZhangGuangzhou University of Chinese Medicine, Guangzhou 510405, China.
Bing LiThe First Affiliated Hospital of Guangxi University of Chinese Medicine, Nanning 530023, China.
Honglin ChenGuangzhou University of Chinese Medicine, Guangzhou 510405, China.
Zhilin GeGuangzhou University of Chinese Medicine, Guangzhou 510405, China.
Qi ShangGuangzhou University of Chinese Medicine, Guangzhou 510405, China.
De LiangThe First Affiliated Hospital of Guangzhou University of Chinese Medicine, Guangzhou 510405, China.
Xiang YuThe First Affiliated Hospital of Guangzhou University of Chinese Medicine, Guangzhou 510405, China.
Hui RenThe Second Affiliated Hospital of Guangzhou Medical University, Guangzhou 510260, China.
Xiaobing JiangThe Second Affiliated Hospital of Guangzhou Medical University, Guangzhou 510260, China.
Jianchao CuiThe First Affiliated Hospital of Guangzhou University of Chinese Medicine, Guangzhou 510405, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Disulfidptosis, a newly recognized cell death triggered by disulfide stress, has garnered attention for its potential role in osteoporosis (OP) pathogenesis. Although sulfide-related proteins are reported to regulate the balance of bone metabolism in OP, the precise involvement of disulfidptosis regulators remains elusive. Herein, leveraging the GSE56815 dataset, we conducted an analysis to delineate disulfidptosis-associated diagnostic clusters and immune landscapes in OP. Subsequently, vertebral bone tissues obtained from OP patients and controls were subjected to RNA sequencing (RNA-seq) for the validation of key disulfidptosis gene expression. Our analysis unveiled seven significant disulfidptosis regulators, including FLNA, ACTB, PRDX1, SLC7A11, NUBPL, OXSM, and RAC1, distinguishing OP samples from controls. Furthermore, employing a random forest model, we identified four diagnostic disulfidptosis regulators including FLNA, SLC7A11, NUBPL, and RAC1 potentially predictive of OP risk. A nomogram model integrating these four regulators was constructed and validated using the GSE35956 dataset, demonstrating promising utility in clinical decision-making, as affirmed by decision curve analysis. Subsequent consensus clustering analysis stratified OP samples into two different disulfidptosis subgroups (clusters A and B) using significant disulfidptosis regulators, with cluster B exhibiting higher disulfidptosis scores and implicating monocyte immunity, closely linked to osteoclastogenesis. Notably, RNA-seq analysis corroborated the expression patterns of two disulfidptosis modulators, PRDX1 and OXSM, consistent with bioinformatics predictions. Collectively, our study sheds light on disulfidptosis patterns, offering potential markers and immunotherapeutic avenues for future OP management.

Indexed as

Osteoporosisrac1 GTP-Binding ProteinSequence Analysis, RNAAmino Acid Transport System y+FemaleFilaminsHumansMaleNomogramsPeroxiredoxinsAmino Acid Transport System y+FilaminsFLNA protein, humanPeroxiredoxinsPRDX1 protein, humanrac1 GTP-Binding ProteinRAC1 protein, humandisulfidptosis modulatorosteoporosisrisk predictionRNA sequencingsubtype classification

Identifiers

PMID38738994
PMCPMC11131997

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.