Evidence map›Paper›PMID 38737722›Full record

ArticleBioinformatics and biology insights2024

DENV-2 Outbreak Associated With Cosmopolitan Genotype Emergence in Western Brazilian Amazon.

Jessiane Rodrigues Ribeiro, Tárcio Peixoto Roca, Gleense Dos Santos Cartonilho, Ana Maísa Passos-Silva, Hillquias Monteiro Moreira, Karolaine Santos Teixeira, André Luiz Ferreira da Silva, Celina Aparecida Bertoni Lugtenburg, Alcione Oliveira Dos Santos, Juan Miguel Villalobos Salcedo and 7 more

Abstract read
In one paragraph

Article in Bioinformatics and biology insights, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Jessiane Rodrigues RibeiroLaboratório de Virologia Molecular, Fundação Oswaldo Cruz Rondônia-Fiocruz Rondônia (FIOCRUZ/RO), Porto Velho, Brazil.
Tárcio Peixoto RocaInstituto Nacional de Ciência e Tecnologia de Epidemiologia da Amazônia Ocidental-INCT-EpiAmO, Porto Velho, Brazil.
Gleense Dos Santos CartonilhoLaboratório de Virologia Molecular, Fundação Oswaldo Cruz Rondônia-Fiocruz Rondônia (FIOCRUZ/RO), Porto Velho, Brazil.
Ana Maísa Passos-SilvaLaboratório de Virologia Molecular, Fundação Oswaldo Cruz Rondônia-Fiocruz Rondônia (FIOCRUZ/RO), Porto Velho, Brazil.ORCID https://orcid.org/0000-0002-9279-3014
Hillquias Monteiro MoreiraLaboratório de Virologia Molecular, Fundação Oswaldo Cruz Rondônia-Fiocruz Rondônia (FIOCRUZ/RO), Porto Velho, Brazil.
Karolaine Santos TeixeiraLaboratório de Virologia Molecular, Fundação Oswaldo Cruz Rondônia-Fiocruz Rondônia (FIOCRUZ/RO), Porto Velho, Brazil.
André Luiz Ferreira da SilvaLaboratório de Virologia Molecular, Fundação Oswaldo Cruz Rondônia-Fiocruz Rondônia (FIOCRUZ/RO), Porto Velho, Brazil.
Celina Aparecida Bertoni LugtenburgLaboratório Central de Saúde Pública de Rondônia-LACEN/RO, 76.803-620, Porto Velho, Brazil.
Alcione Oliveira Dos SantosLaboratório Central de Saúde Pública de Rondônia-LACEN/RO, 76.803-620, Porto Velho, Brazil.
Juan Miguel Villalobos SalcedoCentro de Pesquisa em Medicina Tropical-CEPEM, Porto Velho, Brazil.
Valdinete Alves do NascimentoInstituto Leônidas & Maria Deane-Fundação Oswaldo Cruz do Amazonas, ILMD, Manaus, Brazil.
Victor Costa de SouzaInstituto Leônidas & Maria Deane-Fundação Oswaldo Cruz do Amazonas, ILMD, Manaus, Brazil.
Rosemary Aparecida RoqueInstituto Nacional de Pesquisas na Amazônia, INPA, Manaus, Brazil.
Marco Aurélio KriegerInstituto Carlos Chagas, ICC, Fundação Oswaldo Cruz-Paraná, Curitiba, Brazil.
Felipe Gomes NavecaInstituto Leônidas & Maria Deane-Fundação Oswaldo Cruz do Amazonas, ILMD, Manaus, Brazil.
Rita de Cássia Pontello RampazzoInstituto Carlos Chagas, ICC, Fundação Oswaldo Cruz-Paraná, Curitiba, Brazil.
Deusilene Souza VieiraLaboratório de Virologia Molecular, Fundação Oswaldo Cruz Rondônia-Fiocruz Rondônia (FIOCRUZ/RO), Porto Velho, Brazil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Dengue virus (DENV) causes an important disease and directly affects public health, being the arbovirus that presents the highest number of infections and deaths in the Western Brazilian Amazon. This virus is divided into 4 serotypes that have already circulated in the region. Methodology: Molecular characterization of a cohort containing 841 samples collected from febrile patients between 2021 and 2023 was analyzed using a commercial kit to detect the main arboviruses circulating in Brazil: Zika, DENV-1, DENV-2, DENV-3, DENV-4 and, Chikungunya. Subsequently, Sanger sequencing was performed for positive samples. Results: The cohort detected 162 positive samples, 12 for DENV-1 and 150 identified as DENV-2, indicating co-circulation of serotypes. The samples were subjected to sequencing and the analysis of the sequences that obtained good quality revealed that 5 samples belonged to the V genotype of DENV-1 and 46 were characterized as DENV-2 Cosmopolitan genotype-lineage 5. Conclusion: The results allowed us to identify for the first time the Cosmopolitan genotype in Rondônia, Brazilian Western Amazon, and its fast spread dispersion.

Indexed as

DengueDENV-1DENV-2genotype Cosmopolitan

Identifiers

PMID38737722
PMCPMC11088811

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.